Literature DB >> 25309177

Crystal structure of poly[[trans-di-aqua-bis-[μ2-trans-4,4'-(diazenedi-yl)dipyridine]-nickel(II)] diiodide ethanol disolvate].

Josefina Perles1, Miguel Cortijo1, Santiago Herrero1.   

Abstract

In the title compound, {[Ni(C10H8N4)2(H2O)2]I2·2C2H5OH} n , the complex shows an octa-hedral environment of the Ni(2+) cation in which it is located on a centre of symmetry, linked to two water mol-ecules and the pyridine-N atoms of four 4,4'-(diazenediyl)dipyridine ligands bridging Ni(2+) cations along the b- and c-axis directions, giving rise to a two-dimensional arrangement. The Ni-N bond lengths are in the range 2.109 (4)-2.186 (3) Å and the Ni-O bond length is 2.080 (3) Å. The 4,4'-(diazenedi-yl)dipyridine ligand lies on an inversion centre. An O-H⋯O hydrogen-bond inter-action is observed between water and ethanol mol-ecules. The I(-) ions can be regarded as free anions in the crystal lattice.

Entities:  

Keywords:  bidimensional MOF; cationic network; crystal structure; nickel coordination compound

Year:  2014        PMID: 25309177      PMCID: PMC4186204          DOI: 10.1107/S1600536814016158

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related two-dimensional structures, see: Carlucci et al. (2003 ▶); Noro et al. (2005 ▶, 2006 ▶); Li et al. (2007 ▶); Pan et al. (2010 ▶); Aijaz et al. (2011 ▶).

Experimental

Crystal data

[Ni(C10H8N4)2(H2O)2]I2·2C2H6O M = 809.09 Monoclinic, a = 8.6367 (11) Å b = 13.2598 (16) Å c = 13.4188 (14) Å β = 101.737 (3)° V = 1504.6 (3) Å3 Z = 2 Mo Kα radiation μ = 2.74 mm−1 T = 100 K 0.12 × 0.08 × 0.06 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.77, T max = 0.85 19224 measured reflections 2741 independent reflections 1948 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.097 S = 1.00 2741 reflections 185 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.95 e Å−3 Δρmin = −0.86 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814016158/bx2463sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016158/bx2463Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016158/bx2463Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016158/bx2463Isup4.docx Click here for additional data file. . DOI: 10.1107/S1600536814016158/bx2463fig1.tif Part of the polymeric structure for the title compound. Symmetry code for compound (i):-x, −y+2, −z+2; (2i): −x-y+1,-z+1;(3i):-x,-y+1,-z+2. Click here for additional data file. . DOI: 10.1107/S1600536814016158/bx2463fig2.tif Simplified drawing of a layer parallel to (011). Hydrogen atoms have been omitted for clarity. CCDC reference: 1013422 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Ni(C10H8N4)2(H2O)2]I2·2C2H6OF(000) = 796
Mr = 809.09Dx = 1.786 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.6367 (11) ÅCell parameters from 3456 reflections
b = 13.2598 (16) Åθ = 2.9–21.6°
c = 13.4188 (14) ŵ = 2.74 mm1
β = 101.737 (3)°T = 100 K
V = 1504.6 (3) Å3Prismatic, clear orange–red
Z = 20.12 × 0.08 × 0.06 mm
Bruker Kappa APEXII diffractometer2741 independent reflections
Graphite monochromator1948 reflections with I > 2σ(I)
Detector resolution: 8.3333 pixels mm-1Rint = 0.067
single crystal scansθmax = 25.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.77, Tmax = 0.85k = −15→15
19224 measured reflectionsl = −15→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0416P)2 + 2.7231P] where P = (Fo2 + 2Fc2)/3
2741 reflections(Δ/σ)max < 0.001
185 parametersΔρmax = 0.95 e Å3
3 restraintsΔρmin = −0.86 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.01318 (5)0.80017 (3)0.33435 (3)0.05632 (18)
Ni100.51.00.0183 (2)
C10.1600 (6)0.4962 (4)0.8111 (3)0.0278 (11)
H10.25380.49450.86230.033*
C20.1749 (6)0.4983 (4)0.7105 (3)0.0304 (12)
H20.27630.50.69340.036*
C30.0387 (6)0.4978 (4)0.6352 (3)0.0290 (12)
C4−0.1044 (6)0.4962 (4)0.6634 (4)0.0365 (13)
H4−0.19960.49520.61340.044*
C5−0.1092 (6)0.4962 (4)0.7655 (3)0.0363 (13)
H5−0.20960.4960.7840.044*
C60.1181 (6)0.7073 (4)0.9562 (4)0.0320 (12)
H60.19130.6680.92860.038*
C70.1276 (7)0.8108 (4)0.9503 (4)0.0416 (14)
H70.20520.8420.91960.05*
C80.0228 (7)0.8671 (4)0.9897 (4)0.0402 (15)
C9−0.0855 (7)0.8207 (4)1.0356 (4)0.0444 (15)
H9−0.15750.85911.06510.053*
C10−0.0877 (7)0.7150 (4)1.0381 (4)0.0388 (14)
H10−0.16340.68241.06940.047*
C110.8888 (11)0.7821 (7)0.7076 (6)0.095 (3)
H11A0.90570.84240.75080.142*
H11B0.90550.72170.75040.142*
H11C0.78040.78230.66750.142*
C121.0001 (11)0.7823 (7)0.6391 (7)0.093 (3)
H12A1.10950.78020.67960.112*
H12B0.98320.72140.59570.112*
N10.0212 (5)0.4964 (3)0.8404 (3)0.0226 (9)
N20.0617 (5)0.4987 (3)0.5323 (3)0.0345 (10)
N30.0113 (5)0.6588 (3)0.9985 (3)0.0240 (9)
N40.0347 (6)0.9783 (4)0.9742 (4)0.0490 (13)
O10.2450 (4)0.4913 (3)1.0428 (2)0.0263 (8)
H1A0.305 (5)0.539 (3)1.062 (4)0.039*
H1B0.293 (6)0.442 (3)1.074 (3)0.039*
O20.9803 (5)0.8708 (3)0.5759 (3)0.0568 (12)
H2A0.91920.85760.52030.085*
U11U22U33U12U13U23
I10.0540 (3)0.0502 (3)0.0633 (3)−0.0059 (2)0.0085 (2)−0.0198 (2)
Ni10.0260 (5)0.0134 (4)0.0159 (4)0.0006 (4)0.0054 (3)0.0000 (3)
C10.025 (3)0.038 (3)0.019 (2)0.001 (2)0.001 (2)0.000 (2)
C20.028 (3)0.041 (3)0.024 (2)−0.001 (2)0.011 (2)−0.001 (2)
C30.040 (3)0.030 (3)0.017 (2)0.002 (2)0.005 (2)−0.002 (2)
C40.024 (3)0.061 (4)0.025 (3)0.002 (3)0.005 (2)0.003 (3)
C50.030 (3)0.057 (4)0.024 (3)0.000 (3)0.010 (2)−0.001 (2)
C60.033 (3)0.024 (3)0.038 (3)0.001 (2)0.007 (2)0.003 (2)
C70.041 (3)0.024 (3)0.058 (4)−0.001 (3)0.006 (3)0.009 (3)
C80.041 (4)0.016 (3)0.055 (3)−0.009 (3)−0.010 (3)0.001 (2)
C90.054 (4)0.027 (3)0.052 (4)0.013 (3)0.008 (3)−0.011 (3)
C100.055 (4)0.025 (3)0.038 (3)0.000 (3)0.016 (3)−0.001 (2)
C110.103 (7)0.109 (7)0.068 (5)−0.001 (6)0.008 (5)0.033 (5)
C120.085 (6)0.091 (7)0.106 (7)0.004 (5)0.025 (5)0.033 (5)
N10.028 (2)0.019 (2)0.0208 (19)−0.0026 (18)0.0066 (17)0.0008 (17)
N20.038 (3)0.050 (3)0.018 (2)0.000 (2)0.0098 (16)0.000 (2)
N30.032 (2)0.019 (2)0.0202 (19)−0.0020 (19)0.0026 (17)−0.0018 (16)
N40.044 (3)0.050 (3)0.056 (3)0.002 (3)0.017 (2)−0.008 (2)
O10.027 (2)0.024 (2)0.0267 (17)0.0012 (15)0.0034 (15)0.0030 (14)
O20.056 (3)0.054 (3)0.060 (3)0.006 (2)0.011 (2)0.008 (2)
Ni1—O1i2.080 (3)C7—C81.360 (8)
Ni1—O12.080 (3)C7—H70.95
Ni1—N32.109 (4)C8—C91.366 (8)
Ni1—N3i2.109 (4)C8—N41.496 (7)
Ni1—N12.186 (3)C9—C101.403 (8)
Ni1—N1i2.186 (3)C9—H90.95
C1—N11.336 (6)C10—N31.324 (7)
C1—C21.381 (6)C10—H100.95
C1—H10.95C11—C121.458 (12)
C2—C31.386 (7)C11—H11A0.98
C2—H20.95C11—H11B0.98
C3—C41.365 (7)C11—H11C0.98
C3—N21.435 (6)C12—O21.437 (9)
C4—C51.378 (7)C12—H12A0.99
C4—H40.95C12—H12B0.99
C5—N11.348 (6)N2—N2ii1.229 (8)
C5—H50.95N4—N4iii1.156 (9)
C6—N31.342 (7)O1—H1A0.82 (2)
C6—C71.378 (7)O1—H1B0.833 (19)
C6—H60.95O2—H2A0.84
O1i—Ni1—O1180.00 (19)C6—C7—H7120.9
O1i—Ni1—N389.33 (15)C7—C8—C9119.9 (5)
O1—Ni1—N390.68 (15)C7—C8—N4114.7 (5)
O1i—Ni1—N3i90.67 (15)C9—C8—N4125.3 (6)
O1—Ni1—N3i89.33 (15)C8—C9—C10118.3 (6)
N3—Ni1—N3i180.0 (2)C8—C9—H9120.9
O1i—Ni1—N190.79 (13)C10—C9—H9120.9
O1—Ni1—N189.21 (13)N3—C10—C9122.7 (5)
N3—Ni1—N189.97 (15)N3—C10—H10118.7
N3i—Ni1—N190.03 (15)C9—C10—H10118.7
O1i—Ni1—N1i89.21 (13)C12—C11—H11A109.5
O1—Ni1—N1i90.79 (13)C12—C11—H11B109.5
N3—Ni1—N1i90.03 (15)H11A—C11—H11B109.5
N3i—Ni1—N1i89.97 (15)C12—C11—H11C109.5
N1—Ni1—N1i180.0 (2)H11A—C11—H11C109.5
N1—C1—C2123.7 (4)H11B—C11—H11C109.5
N1—C1—H1118.1O2—C12—C11111.0 (7)
C2—C1—H1118.1O2—C12—H12A109.4
C1—C2—C3118.6 (5)C11—C12—H12A109.4
C1—C2—H2120.7O2—C12—H12B109.4
C3—C2—H2120.7C11—C12—H12B109.4
C4—C3—C2118.7 (4)H12A—C12—H12B108.0
C4—C3—N2125.3 (4)C1—N1—C5116.3 (4)
C2—C3—N2116.0 (5)C1—N1—Ni1123.2 (3)
C3—C4—C5119.2 (5)C5—N1—Ni1120.5 (3)
C3—C4—H4120.4N2ii—N2—C3114.1 (5)
C5—C4—H4120.4C10—N3—C6117.1 (4)
N1—C5—C4123.5 (5)C10—N3—Ni1121.6 (4)
N1—C5—H5118.2C6—N3—Ni1121.3 (3)
C4—C5—H5118.2N4iii—N4—C8110.5 (7)
N3—C6—C7123.7 (5)Ni1—O1—H1A126 (4)
N3—C6—H6118.1Ni1—O1—H1B124 (4)
C7—C6—H6118.1H1A—O1—H1B103 (5)
C8—C7—C6118.2 (5)C12—O2—H2A109.5
C8—C7—H7120.9
D—H···AD—HH···AD···AD—H···A
O1—H1A···O2iv0.83 (4)1.91 (4)2.703 (6)161 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯O2i 0.83 (4)1.91 (4)2.703 (6)161 (5)

Symmetry code: (i) .

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