Literature DB >> 25309173

Crystal structure of poly[{μ-N,N'-bis[(pyridin-4-yl)meth-yl]oxalamide}-μ-oxalato-cobalt(II)].

Hengye Zou1, Yanjuan Qi1.   

Abstract

In the polymeric title compound, [Co(C2O4)(C14H14N4O2)] n , the Co(II) atom is six-coordinated by two N atoms from symmetry-related bis-[(pyridin-4-yl)meth-yl]oxalamide (BPMO) ligands and four O atoms from two centrosymmetric oxalate anions in a distorted octa-hedral coordination geometry. The Co(II) atoms are linked by the oxalate anions into a chain running parallel to [100]. The chains are linked by the BPMO ligands into a three-dimensional architecture. In addition, N-H⋯O hydrogen bonds stabilize the crystal packing.

Entities:  

Keywords:  cobalt(II); crystal structure; hydrogen bonds; metal-organic framework; oxalate anion

Year:  2014        PMID: 25309173      PMCID: PMC4186178          DOI: 10.1107/S1600536814015608

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on compounds with metal-organic framework structures, see: Kitagawa et al. (2004 ▶); Ma et al. (2009 ▶); Li et al. (2005 ▶); Wang et al. (2007 ▶). For related CoII complexes, see: Ma et al. (2005 ▶).

Experimental

Crystal data

[Co(C2O4)(C14H14N4O2)] M = 417.24 Monoclinic, a = 8.4143 (12) Å b = 24.421 (4) Å c = 9.2884 (14) Å β = 113.322 (2)° V = 1752.7 (4) Å3 Z = 4 Mo Kα radiation μ = 1.02 mm−1 T = 293 K 0.43 × 0.25 × 0.25 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.740, T max = 0.785 11121 measured reflections 4254 independent reflections 2027 reflections with I > 2σ(I) R int = 0.085

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.149 S = 0.98 4254 reflections 244 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.39 e Å−3

Data collection: APEX2 (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814015608/bt6986sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015608/bt6986Isup2.hkl Click here for additional data file. x y z x y z x y z x y z . DOI: 10.1107/S1600536814015608/bt6986fig1.tif A view of the mol­ecule of (I). Displacement ellipsoids are drawn at the 30% probability level. (i) − x + 1, −y, − z + 1; (ii) −x, −y, − z + 1; (iii) x, − y + , z + ; (iv) x + 1, − y + , z − . Click here for additional data file. . DOI: 10.1107/S1600536814015608/bt6986fig2.tif View of the three-dimensional structure of (I). CCDC reference: 1012047 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Co(C2O4)(C14H14N4O2)]F(000) = 852
Mr = 417.24Dx = 1.581 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4380 reflections
a = 8.4143 (12) Åθ = 1.7–22.8°
b = 24.421 (4) ŵ = 1.02 mm1
c = 9.2884 (14) ÅT = 293 K
β = 113.322 (2)°Block, pink
V = 1752.7 (4) Å30.43 × 0.25 × 0.25 mm
Z = 4
Bruker SMART APEXII CCD diffractometer4254 independent reflections
Radiation source: fine-focus sealed tube2027 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.085
phi and ω scansθmax = 28.4°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→10
Tmin = 0.740, Tmax = 0.785k = −32→32
11121 measured reflectionsl = −12→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0591P)2] where P = (Fo2 + 2Fc2)/3
4254 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5475 (6)0.02677 (18)0.5426 (6)0.0391 (12)
C2−0.0727 (6)0.00051 (18)0.4182 (6)0.0373 (11)
C30.0325 (7)0.0938 (2)0.0435 (7)0.0588 (15)
H3A−0.06280.09830.06920.071*
C40.0141 (7)0.1061 (2)−0.1055 (7)0.0644 (16)
H4−0.09060.1187−0.17970.077*
C50.1578 (7)0.0990 (2)−0.1424 (6)0.0553 (15)
H50.15070.1079−0.24220.066*
C60.3094 (6)0.07904 (17)−0.0329 (6)0.0358 (11)
C70.3141 (6)0.06856 (18)0.1129 (6)0.0413 (12)
H70.41720.05550.18840.050*
C80.4646 (6)0.06836 (16)−0.0724 (6)0.0398 (12)
H8A0.55780.05370.01950.048*
H8B0.43430.0409−0.15430.048*
C90.5876 (6)0.15839 (19)−0.0278 (6)0.0372 (11)
C100.6436 (5)0.20856 (18)−0.0958 (6)0.0353 (11)
C110.7359 (6)0.30333 (18)−0.0376 (6)0.0411 (12)
H11A0.72240.33060.03280.049*
H11B0.65760.3130−0.14320.049*
C120.9189 (6)0.30606 (19)−0.0279 (5)0.0396 (12)
C131.0379 (7)0.2660 (2)0.0275 (7)0.0700 (18)
H131.00940.23340.06320.084*
C141.2033 (7)0.2734 (2)0.0312 (8)0.083 (2)
H141.28590.24580.06660.100*
C151.2411 (7)0.3229 (2)−0.0193 (7)0.0631 (16)
H151.35170.3281−0.01650.076*
C160.9683 (6)0.35427 (19)−0.0767 (6)0.0431 (12)
H160.88610.3819−0.11530.052*
N10.1806 (5)0.07571 (16)0.1551 (5)0.0455 (11)
N20.5257 (5)0.11716 (15)−0.1243 (4)0.0403 (10)
H20.52130.1190−0.21830.048*
N30.6855 (4)0.25082 (15)0.0010 (4)0.0423 (10)
H30.68260.24670.09180.051*
N41.1276 (5)0.36374 (16)−0.0717 (5)0.0439 (10)
O1−0.0491 (4)0.02611 (12)0.3106 (4)0.0434 (8)
O2−0.2077 (4)−0.02540 (13)0.4033 (4)0.0503 (9)
O30.4618 (4)0.07115 (12)0.5055 (4)0.0446 (9)
O40.6991 (4)0.02217 (12)0.6401 (4)0.0494 (9)
O50.5999 (5)0.15868 (13)0.1070 (4)0.0612 (11)
O60.6455 (4)0.20801 (12)−0.2267 (4)0.0464 (8)
Co10.20072 (8)0.05586 (2)0.38091 (8)0.0405 (2)
U11U22U33U12U13U23
C10.035 (3)0.043 (3)0.049 (3)0.003 (2)0.026 (3)−0.001 (2)
C20.034 (3)0.033 (2)0.051 (3)0.002 (2)0.023 (2)−0.008 (2)
C30.050 (4)0.067 (4)0.068 (4)0.013 (3)0.034 (3)0.009 (3)
C40.043 (4)0.087 (4)0.053 (4)0.018 (3)0.009 (3)0.015 (3)
C50.063 (4)0.061 (4)0.044 (4)0.003 (3)0.023 (3)0.001 (3)
C60.037 (3)0.026 (2)0.043 (3)−0.004 (2)0.015 (3)−0.005 (2)
C70.034 (3)0.044 (3)0.046 (3)0.006 (2)0.016 (2)0.004 (3)
C80.053 (3)0.027 (2)0.048 (3)−0.004 (2)0.029 (3)−0.001 (2)
C90.035 (3)0.041 (3)0.037 (3)−0.010 (2)0.016 (2)−0.002 (2)
C100.034 (3)0.039 (3)0.038 (3)−0.010 (2)0.019 (2)−0.001 (2)
C110.048 (3)0.040 (3)0.044 (3)−0.010 (2)0.027 (3)0.001 (2)
C120.043 (3)0.042 (3)0.034 (3)−0.013 (2)0.016 (2)−0.001 (2)
C130.052 (4)0.045 (3)0.109 (6)−0.009 (3)0.028 (4)0.015 (3)
C140.050 (4)0.046 (4)0.142 (7)0.003 (3)0.026 (4)0.016 (4)
C150.045 (3)0.048 (3)0.104 (5)−0.003 (3)0.036 (3)−0.003 (3)
C160.039 (3)0.045 (3)0.052 (3)−0.006 (2)0.024 (3)0.001 (3)
N10.041 (3)0.047 (2)0.054 (3)0.0103 (19)0.024 (2)0.009 (2)
N20.052 (3)0.041 (2)0.035 (2)−0.0080 (19)0.026 (2)−0.0039 (19)
N30.052 (3)0.045 (2)0.038 (3)−0.0204 (19)0.026 (2)−0.005 (2)
N40.039 (2)0.042 (2)0.058 (3)−0.0088 (19)0.027 (2)−0.005 (2)
O10.040 (2)0.044 (2)0.048 (2)0.0012 (15)0.0202 (17)0.0061 (17)
O20.042 (2)0.057 (2)0.055 (2)−0.0090 (17)0.0222 (18)−0.0050 (18)
O30.0356 (19)0.0339 (18)0.070 (3)0.0063 (14)0.0269 (18)0.0041 (16)
O40.037 (2)0.041 (2)0.065 (3)0.0040 (16)0.0145 (19)−0.0052 (17)
O50.098 (3)0.050 (2)0.044 (2)−0.036 (2)0.037 (2)−0.0086 (18)
O60.064 (2)0.044 (2)0.041 (2)−0.0107 (16)0.0318 (19)−0.0026 (16)
Co10.0349 (4)0.0385 (4)0.0551 (5)0.0057 (3)0.0253 (3)0.0030 (3)
C1—O41.243 (5)C11—N31.440 (5)
C1—O31.271 (5)C11—C121.508 (6)
C1—C1i1.573 (9)C11—H11A0.9700
C2—O21.259 (5)C11—H11B0.9700
C2—O11.260 (5)C12—C131.348 (6)
C2—C2ii1.527 (9)C12—C161.383 (6)
C3—N11.342 (6)C13—C141.390 (7)
C3—C41.363 (7)C13—H130.9300
C3—H3A0.9300C14—C151.380 (7)
C4—C51.392 (7)C14—H140.9300
C4—H40.9300C15—N41.332 (6)
C5—C61.369 (6)C15—H150.9300
C5—H50.9300C16—N41.343 (5)
C6—C71.364 (6)C16—H160.9300
C6—C81.512 (6)N1—Co12.093 (4)
C7—N11.339 (5)N2—H20.8600
C7—H70.9300N3—H30.8600
C8—N21.454 (5)N4—Co1iii2.155 (4)
C8—H8A0.9700O1—Co12.070 (3)
C8—H8B0.9700O2—Co1ii2.117 (3)
C9—O51.215 (5)O3—Co12.072 (3)
C9—N21.311 (5)O4—Co1i2.124 (3)
C9—C101.535 (6)Co1—O2ii2.117 (3)
C10—O61.222 (5)Co1—O4i2.124 (3)
C10—N31.322 (5)Co1—N4iv2.155 (4)
O4—C1—O3125.7 (4)C12—C13—H13120.0
O4—C1—C1i117.5 (5)C14—C13—H13120.0
O3—C1—C1i116.8 (6)C15—C14—C13117.9 (5)
O2—C2—O1125.5 (4)C15—C14—H14121.0
O2—C2—C2ii115.7 (6)C13—C14—H14121.0
O1—C2—C2ii118.8 (5)N4—C15—C14123.5 (5)
N1—C3—C4123.7 (5)N4—C15—H15118.2
N1—C3—H3A118.2C14—C15—H15118.2
C4—C3—H3A118.2N4—C16—C12124.1 (4)
C3—C4—C5117.5 (5)N4—C16—H16117.9
C3—C4—H4121.2C12—C16—H16117.9
C5—C4—H4121.2C7—N1—C3116.5 (5)
C6—C5—C4120.4 (5)C7—N1—Co1121.2 (3)
C6—C5—H5119.8C3—N1—Co1122.2 (3)
C4—C5—H5119.8C9—N2—C8120.0 (4)
C7—C6—C5117.2 (4)C9—N2—H2120.0
C7—C6—C8121.4 (4)C8—N2—H2120.0
C5—C6—C8121.5 (4)C10—N3—C11123.5 (4)
N1—C7—C6124.7 (5)C10—N3—H3118.3
N1—C7—H7117.7C11—N3—H3118.3
C6—C7—H7117.7C15—N4—C16116.4 (4)
N2—C8—C6113.1 (3)C15—N4—Co1iii122.3 (3)
N2—C8—H8A109.0C16—N4—Co1iii120.8 (3)
C6—C8—H8A109.0C2—O1—Co1112.5 (3)
N2—C8—H8B109.0C2—O2—Co1ii112.7 (3)
C6—C8—H8B109.0C1—O3—Co1111.1 (3)
H8A—C8—H8B107.8C1—O4—Co1i110.2 (3)
O5—C9—N2123.9 (4)O1—Co1—O3163.58 (13)
O5—C9—C10120.3 (4)O1—Co1—N195.51 (15)
N2—C9—C10115.8 (4)O3—Co1—N199.50 (14)
O6—C10—N3125.5 (4)O1—Co1—O2ii79.59 (13)
O6—C10—C9121.8 (4)O3—Co1—O2ii84.77 (12)
N3—C10—C9112.7 (4)N1—Co1—O2ii172.33 (14)
N3—C11—C12114.8 (4)O1—Co1—O4i92.68 (12)
N3—C11—H11A108.6O3—Co1—O4i80.86 (12)
C12—C11—H11A108.6N1—Co1—O4i89.62 (14)
N3—C11—H11B108.6O2ii—Co1—O4i84.76 (13)
C12—C11—H11B108.6O1—Co1—N4iv92.74 (13)
H11A—C11—H11B107.6O3—Co1—N4iv92.70 (13)
C13—C12—C16117.9 (4)N1—Co1—N4iv94.43 (15)
C13—C12—C11125.3 (4)O2ii—Co1—N4iv91.71 (14)
C16—C12—C11116.8 (4)O4i—Co1—N4iv172.90 (15)
C12—C13—C14120.0 (5)
N1—C3—C4—C50.2 (9)C14—C15—N4—Co1iii171.3 (5)
C3—C4—C5—C61.7 (8)C12—C16—N4—C151.5 (8)
C4—C5—C6—C7−2.3 (7)C12—C16—N4—Co1iii−171.1 (4)
C4—C5—C6—C8177.0 (5)O2—C2—O1—Co1−173.9 (3)
C5—C6—C7—N11.0 (7)C2ii—C2—O1—Co15.5 (6)
C8—C6—C7—N1−178.3 (4)O1—C2—O2—Co1ii−174.5 (3)
C7—C6—C8—N2−121.0 (5)C2ii—C2—O2—Co1ii6.2 (6)
C5—C6—C8—N259.8 (6)O4—C1—O3—Co1−166.2 (4)
O5—C9—C10—O6174.2 (4)C1i—C1—O3—Co113.8 (6)
N2—C9—C10—O6−6.6 (6)O3—C1—O4—Co1i−166.7 (4)
O5—C9—C10—N3−6.6 (6)C1i—C1—O4—Co1i13.4 (6)
N2—C9—C10—N3172.6 (4)C2—O1—Co1—O311.5 (6)
N3—C11—C12—C13−6.9 (7)C2—O1—Co1—N1167.5 (3)
N3—C11—C12—C16174.7 (4)C2—O1—Co1—O2ii−6.5 (3)
C16—C12—C13—C14−1.3 (9)C2—O1—Co1—O4i77.7 (3)
C11—C12—C13—C14−179.7 (5)C2—O1—Co1—N4iv−97.7 (3)
C12—C13—C14—C151.6 (10)C1—O3—Co1—O151.8 (6)
C13—C14—C15—N4−0.3 (10)C1—O3—Co1—N1−104.0 (3)
C13—C12—C16—N4−0.3 (8)C1—O3—Co1—O2ii69.6 (3)
C11—C12—C16—N4178.2 (4)C1—O3—Co1—O4i−15.9 (3)
C6—C7—N1—C30.9 (7)C1—O3—Co1—N4iv161.1 (3)
C6—C7—N1—Co1178.1 (3)C7—N1—Co1—O1−142.6 (3)
C4—C3—N1—C7−1.5 (8)C3—N1—Co1—O134.4 (4)
C4—C3—N1—Co1−178.7 (4)C7—N1—Co1—O330.7 (4)
O5—C9—N2—C80.8 (7)C3—N1—Co1—O3−152.3 (4)
C10—C9—N2—C8−178.3 (4)C7—N1—Co1—O2ii−92.7 (11)
C6—C8—N2—C964.2 (6)C3—N1—Co1—O2ii84.3 (11)
O6—C10—N3—C111.6 (7)C7—N1—Co1—O4i−50.0 (4)
C9—C10—N3—C11−177.5 (4)C3—N1—Co1—O4i127.0 (4)
C12—C11—N3—C10−77.4 (6)C7—N1—Co1—N4iv124.2 (4)
C14—C15—N4—C16−1.2 (9)C3—N1—Co1—N4iv−58.8 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3···O6v0.862.142.863 (5)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O6i 0.862.142.863 (5)142

Symmetry code: (i) .

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