| Literature DB >> 25309173 |
Hengye Zou1, Yanjuan Qi1.
Abstract
In the polymeric title compound, [Co(C2O4)(C14H14N4O2)] n , the Co(II) atom is six-coordinated by two N atoms from symmetry-related bis-[(pyridin-4-yl)meth-yl]oxalamide (BPMO) ligands and four O atoms from two centrosymmetric oxalate anions in a distorted octa-hedral coordination geometry. The Co(II) atoms are linked by the oxalate anions into a chain running parallel to [100]. The chains are linked by the BPMO ligands into a three-dimensional architecture. In addition, N-H⋯O hydrogen bonds stabilize the crystal packing.Entities:
Keywords: cobalt(II); crystal structure; hydrogen bonds; metal-organic framework; oxalate anion
Year: 2014 PMID: 25309173 PMCID: PMC4186178 DOI: 10.1107/S1600536814015608
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C2O4)(C14H14N4O2)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4380 reflections |
| θ = 1.7–22.8° | |
| µ = 1.02 mm−1 | |
| β = 113.322 (2)° | Block, pink |
| 0.43 × 0.25 × 0.25 mm | |
| Bruker SMART APEXII CCD diffractometer | 4254 independent reflections |
| Radiation source: fine-focus sealed tube | 2027 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 28.4°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 11121 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4254 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.5475 (6) | 0.02677 (18) | 0.5426 (6) | 0.0391 (12) | |
| C2 | −0.0727 (6) | 0.00051 (18) | 0.4182 (6) | 0.0373 (11) | |
| C3 | 0.0325 (7) | 0.0938 (2) | 0.0435 (7) | 0.0588 (15) | |
| H3A | −0.0628 | 0.0983 | 0.0692 | 0.071* | |
| C4 | 0.0141 (7) | 0.1061 (2) | −0.1055 (7) | 0.0644 (16) | |
| H4 | −0.0906 | 0.1187 | −0.1797 | 0.077* | |
| C5 | 0.1578 (7) | 0.0990 (2) | −0.1424 (6) | 0.0553 (15) | |
| H5 | 0.1507 | 0.1079 | −0.2422 | 0.066* | |
| C6 | 0.3094 (6) | 0.07904 (17) | −0.0329 (6) | 0.0358 (11) | |
| C7 | 0.3141 (6) | 0.06856 (18) | 0.1129 (6) | 0.0413 (12) | |
| H7 | 0.4172 | 0.0555 | 0.1884 | 0.050* | |
| C8 | 0.4646 (6) | 0.06836 (16) | −0.0724 (6) | 0.0398 (12) | |
| H8A | 0.5578 | 0.0537 | 0.0195 | 0.048* | |
| H8B | 0.4343 | 0.0409 | −0.1543 | 0.048* | |
| C9 | 0.5876 (6) | 0.15839 (19) | −0.0278 (6) | 0.0372 (11) | |
| C10 | 0.6436 (5) | 0.20856 (18) | −0.0958 (6) | 0.0353 (11) | |
| C11 | 0.7359 (6) | 0.30333 (18) | −0.0376 (6) | 0.0411 (12) | |
| H11A | 0.7224 | 0.3306 | 0.0328 | 0.049* | |
| H11B | 0.6576 | 0.3130 | −0.1432 | 0.049* | |
| C12 | 0.9189 (6) | 0.30606 (19) | −0.0279 (5) | 0.0396 (12) | |
| C13 | 1.0379 (7) | 0.2660 (2) | 0.0275 (7) | 0.0700 (18) | |
| H13 | 1.0094 | 0.2334 | 0.0632 | 0.084* | |
| C14 | 1.2033 (7) | 0.2734 (2) | 0.0312 (8) | 0.083 (2) | |
| H14 | 1.2859 | 0.2458 | 0.0666 | 0.100* | |
| C15 | 1.2411 (7) | 0.3229 (2) | −0.0193 (7) | 0.0631 (16) | |
| H15 | 1.3517 | 0.3281 | −0.0165 | 0.076* | |
| C16 | 0.9683 (6) | 0.35427 (19) | −0.0767 (6) | 0.0431 (12) | |
| H16 | 0.8861 | 0.3819 | −0.1153 | 0.052* | |
| N1 | 0.1806 (5) | 0.07571 (16) | 0.1551 (5) | 0.0455 (11) | |
| N2 | 0.5257 (5) | 0.11716 (15) | −0.1243 (4) | 0.0403 (10) | |
| H2 | 0.5213 | 0.1190 | −0.2183 | 0.048* | |
| N3 | 0.6855 (4) | 0.25082 (15) | 0.0010 (4) | 0.0423 (10) | |
| H3 | 0.6826 | 0.2467 | 0.0918 | 0.051* | |
| N4 | 1.1276 (5) | 0.36374 (16) | −0.0717 (5) | 0.0439 (10) | |
| O1 | −0.0491 (4) | 0.02611 (12) | 0.3106 (4) | 0.0434 (8) | |
| O2 | −0.2077 (4) | −0.02540 (13) | 0.4033 (4) | 0.0503 (9) | |
| O3 | 0.4618 (4) | 0.07115 (12) | 0.5055 (4) | 0.0446 (9) | |
| O4 | 0.6991 (4) | 0.02217 (12) | 0.6401 (4) | 0.0494 (9) | |
| O5 | 0.5999 (5) | 0.15868 (13) | 0.1070 (4) | 0.0612 (11) | |
| O6 | 0.6455 (4) | 0.20801 (12) | −0.2267 (4) | 0.0464 (8) | |
| Co1 | 0.20072 (8) | 0.05586 (2) | 0.38091 (8) | 0.0405 (2) |
| C1 | 0.035 (3) | 0.043 (3) | 0.049 (3) | 0.003 (2) | 0.026 (3) | −0.001 (2) |
| C2 | 0.034 (3) | 0.033 (2) | 0.051 (3) | 0.002 (2) | 0.023 (2) | −0.008 (2) |
| C3 | 0.050 (4) | 0.067 (4) | 0.068 (4) | 0.013 (3) | 0.034 (3) | 0.009 (3) |
| C4 | 0.043 (4) | 0.087 (4) | 0.053 (4) | 0.018 (3) | 0.009 (3) | 0.015 (3) |
| C5 | 0.063 (4) | 0.061 (4) | 0.044 (4) | 0.003 (3) | 0.023 (3) | 0.001 (3) |
| C6 | 0.037 (3) | 0.026 (2) | 0.043 (3) | −0.004 (2) | 0.015 (3) | −0.005 (2) |
| C7 | 0.034 (3) | 0.044 (3) | 0.046 (3) | 0.006 (2) | 0.016 (2) | 0.004 (3) |
| C8 | 0.053 (3) | 0.027 (2) | 0.048 (3) | −0.004 (2) | 0.029 (3) | −0.001 (2) |
| C9 | 0.035 (3) | 0.041 (3) | 0.037 (3) | −0.010 (2) | 0.016 (2) | −0.002 (2) |
| C10 | 0.034 (3) | 0.039 (3) | 0.038 (3) | −0.010 (2) | 0.019 (2) | −0.001 (2) |
| C11 | 0.048 (3) | 0.040 (3) | 0.044 (3) | −0.010 (2) | 0.027 (3) | 0.001 (2) |
| C12 | 0.043 (3) | 0.042 (3) | 0.034 (3) | −0.013 (2) | 0.016 (2) | −0.001 (2) |
| C13 | 0.052 (4) | 0.045 (3) | 0.109 (6) | −0.009 (3) | 0.028 (4) | 0.015 (3) |
| C14 | 0.050 (4) | 0.046 (4) | 0.142 (7) | 0.003 (3) | 0.026 (4) | 0.016 (4) |
| C15 | 0.045 (3) | 0.048 (3) | 0.104 (5) | −0.003 (3) | 0.036 (3) | −0.003 (3) |
| C16 | 0.039 (3) | 0.045 (3) | 0.052 (3) | −0.006 (2) | 0.024 (3) | 0.001 (3) |
| N1 | 0.041 (3) | 0.047 (2) | 0.054 (3) | 0.0103 (19) | 0.024 (2) | 0.009 (2) |
| N2 | 0.052 (3) | 0.041 (2) | 0.035 (2) | −0.0080 (19) | 0.026 (2) | −0.0039 (19) |
| N3 | 0.052 (3) | 0.045 (2) | 0.038 (3) | −0.0204 (19) | 0.026 (2) | −0.005 (2) |
| N4 | 0.039 (2) | 0.042 (2) | 0.058 (3) | −0.0088 (19) | 0.027 (2) | −0.005 (2) |
| O1 | 0.040 (2) | 0.044 (2) | 0.048 (2) | 0.0012 (15) | 0.0202 (17) | 0.0061 (17) |
| O2 | 0.042 (2) | 0.057 (2) | 0.055 (2) | −0.0090 (17) | 0.0222 (18) | −0.0050 (18) |
| O3 | 0.0356 (19) | 0.0339 (18) | 0.070 (3) | 0.0063 (14) | 0.0269 (18) | 0.0041 (16) |
| O4 | 0.037 (2) | 0.041 (2) | 0.065 (3) | 0.0040 (16) | 0.0145 (19) | −0.0052 (17) |
| O5 | 0.098 (3) | 0.050 (2) | 0.044 (2) | −0.036 (2) | 0.037 (2) | −0.0086 (18) |
| O6 | 0.064 (2) | 0.044 (2) | 0.041 (2) | −0.0107 (16) | 0.0318 (19) | −0.0026 (16) |
| Co1 | 0.0349 (4) | 0.0385 (4) | 0.0551 (5) | 0.0057 (3) | 0.0253 (3) | 0.0030 (3) |
| C1—O4 | 1.243 (5) | C11—N3 | 1.440 (5) |
| C1—O3 | 1.271 (5) | C11—C12 | 1.508 (6) |
| C1—C1i | 1.573 (9) | C11—H11A | 0.9700 |
| C2—O2 | 1.259 (5) | C11—H11B | 0.9700 |
| C2—O1 | 1.260 (5) | C12—C13 | 1.348 (6) |
| C2—C2ii | 1.527 (9) | C12—C16 | 1.383 (6) |
| C3—N1 | 1.342 (6) | C13—C14 | 1.390 (7) |
| C3—C4 | 1.363 (7) | C13—H13 | 0.9300 |
| C3—H3A | 0.9300 | C14—C15 | 1.380 (7) |
| C4—C5 | 1.392 (7) | C14—H14 | 0.9300 |
| C4—H4 | 0.9300 | C15—N4 | 1.332 (6) |
| C5—C6 | 1.369 (6) | C15—H15 | 0.9300 |
| C5—H5 | 0.9300 | C16—N4 | 1.343 (5) |
| C6—C7 | 1.364 (6) | C16—H16 | 0.9300 |
| C6—C8 | 1.512 (6) | N1—Co1 | 2.093 (4) |
| C7—N1 | 1.339 (5) | N2—H2 | 0.8600 |
| C7—H7 | 0.9300 | N3—H3 | 0.8600 |
| C8—N2 | 1.454 (5) | N4—Co1iii | 2.155 (4) |
| C8—H8A | 0.9700 | O1—Co1 | 2.070 (3) |
| C8—H8B | 0.9700 | O2—Co1ii | 2.117 (3) |
| C9—O5 | 1.215 (5) | O3—Co1 | 2.072 (3) |
| C9—N2 | 1.311 (5) | O4—Co1i | 2.124 (3) |
| C9—C10 | 1.535 (6) | Co1—O2ii | 2.117 (3) |
| C10—O6 | 1.222 (5) | Co1—O4i | 2.124 (3) |
| C10—N3 | 1.322 (5) | Co1—N4iv | 2.155 (4) |
| O4—C1—O3 | 125.7 (4) | C12—C13—H13 | 120.0 |
| O4—C1—C1i | 117.5 (5) | C14—C13—H13 | 120.0 |
| O3—C1—C1i | 116.8 (6) | C15—C14—C13 | 117.9 (5) |
| O2—C2—O1 | 125.5 (4) | C15—C14—H14 | 121.0 |
| O2—C2—C2ii | 115.7 (6) | C13—C14—H14 | 121.0 |
| O1—C2—C2ii | 118.8 (5) | N4—C15—C14 | 123.5 (5) |
| N1—C3—C4 | 123.7 (5) | N4—C15—H15 | 118.2 |
| N1—C3—H3A | 118.2 | C14—C15—H15 | 118.2 |
| C4—C3—H3A | 118.2 | N4—C16—C12 | 124.1 (4) |
| C3—C4—C5 | 117.5 (5) | N4—C16—H16 | 117.9 |
| C3—C4—H4 | 121.2 | C12—C16—H16 | 117.9 |
| C5—C4—H4 | 121.2 | C7—N1—C3 | 116.5 (5) |
| C6—C5—C4 | 120.4 (5) | C7—N1—Co1 | 121.2 (3) |
| C6—C5—H5 | 119.8 | C3—N1—Co1 | 122.2 (3) |
| C4—C5—H5 | 119.8 | C9—N2—C8 | 120.0 (4) |
| C7—C6—C5 | 117.2 (4) | C9—N2—H2 | 120.0 |
| C7—C6—C8 | 121.4 (4) | C8—N2—H2 | 120.0 |
| C5—C6—C8 | 121.5 (4) | C10—N3—C11 | 123.5 (4) |
| N1—C7—C6 | 124.7 (5) | C10—N3—H3 | 118.3 |
| N1—C7—H7 | 117.7 | C11—N3—H3 | 118.3 |
| C6—C7—H7 | 117.7 | C15—N4—C16 | 116.4 (4) |
| N2—C8—C6 | 113.1 (3) | C15—N4—Co1iii | 122.3 (3) |
| N2—C8—H8A | 109.0 | C16—N4—Co1iii | 120.8 (3) |
| C6—C8—H8A | 109.0 | C2—O1—Co1 | 112.5 (3) |
| N2—C8—H8B | 109.0 | C2—O2—Co1ii | 112.7 (3) |
| C6—C8—H8B | 109.0 | C1—O3—Co1 | 111.1 (3) |
| H8A—C8—H8B | 107.8 | C1—O4—Co1i | 110.2 (3) |
| O5—C9—N2 | 123.9 (4) | O1—Co1—O3 | 163.58 (13) |
| O5—C9—C10 | 120.3 (4) | O1—Co1—N1 | 95.51 (15) |
| N2—C9—C10 | 115.8 (4) | O3—Co1—N1 | 99.50 (14) |
| O6—C10—N3 | 125.5 (4) | O1—Co1—O2ii | 79.59 (13) |
| O6—C10—C9 | 121.8 (4) | O3—Co1—O2ii | 84.77 (12) |
| N3—C10—C9 | 112.7 (4) | N1—Co1—O2ii | 172.33 (14) |
| N3—C11—C12 | 114.8 (4) | O1—Co1—O4i | 92.68 (12) |
| N3—C11—H11A | 108.6 | O3—Co1—O4i | 80.86 (12) |
| C12—C11—H11A | 108.6 | N1—Co1—O4i | 89.62 (14) |
| N3—C11—H11B | 108.6 | O2ii—Co1—O4i | 84.76 (13) |
| C12—C11—H11B | 108.6 | O1—Co1—N4iv | 92.74 (13) |
| H11A—C11—H11B | 107.6 | O3—Co1—N4iv | 92.70 (13) |
| C13—C12—C16 | 117.9 (4) | N1—Co1—N4iv | 94.43 (15) |
| C13—C12—C11 | 125.3 (4) | O2ii—Co1—N4iv | 91.71 (14) |
| C16—C12—C11 | 116.8 (4) | O4i—Co1—N4iv | 172.90 (15) |
| C12—C13—C14 | 120.0 (5) | ||
| N1—C3—C4—C5 | 0.2 (9) | C14—C15—N4—Co1iii | 171.3 (5) |
| C3—C4—C5—C6 | 1.7 (8) | C12—C16—N4—C15 | 1.5 (8) |
| C4—C5—C6—C7 | −2.3 (7) | C12—C16—N4—Co1iii | −171.1 (4) |
| C4—C5—C6—C8 | 177.0 (5) | O2—C2—O1—Co1 | −173.9 (3) |
| C5—C6—C7—N1 | 1.0 (7) | C2ii—C2—O1—Co1 | 5.5 (6) |
| C8—C6—C7—N1 | −178.3 (4) | O1—C2—O2—Co1ii | −174.5 (3) |
| C7—C6—C8—N2 | −121.0 (5) | C2ii—C2—O2—Co1ii | 6.2 (6) |
| C5—C6—C8—N2 | 59.8 (6) | O4—C1—O3—Co1 | −166.2 (4) |
| O5—C9—C10—O6 | 174.2 (4) | C1i—C1—O3—Co1 | 13.8 (6) |
| N2—C9—C10—O6 | −6.6 (6) | O3—C1—O4—Co1i | −166.7 (4) |
| O5—C9—C10—N3 | −6.6 (6) | C1i—C1—O4—Co1i | 13.4 (6) |
| N2—C9—C10—N3 | 172.6 (4) | C2—O1—Co1—O3 | 11.5 (6) |
| N3—C11—C12—C13 | −6.9 (7) | C2—O1—Co1—N1 | 167.5 (3) |
| N3—C11—C12—C16 | 174.7 (4) | C2—O1—Co1—O2ii | −6.5 (3) |
| C16—C12—C13—C14 | −1.3 (9) | C2—O1—Co1—O4i | 77.7 (3) |
| C11—C12—C13—C14 | −179.7 (5) | C2—O1—Co1—N4iv | −97.7 (3) |
| C12—C13—C14—C15 | 1.6 (10) | C1—O3—Co1—O1 | 51.8 (6) |
| C13—C14—C15—N4 | −0.3 (10) | C1—O3—Co1—N1 | −104.0 (3) |
| C13—C12—C16—N4 | −0.3 (8) | C1—O3—Co1—O2ii | 69.6 (3) |
| C11—C12—C16—N4 | 178.2 (4) | C1—O3—Co1—O4i | −15.9 (3) |
| C6—C7—N1—C3 | 0.9 (7) | C1—O3—Co1—N4iv | 161.1 (3) |
| C6—C7—N1—Co1 | 178.1 (3) | C7—N1—Co1—O1 | −142.6 (3) |
| C4—C3—N1—C7 | −1.5 (8) | C3—N1—Co1—O1 | 34.4 (4) |
| C4—C3—N1—Co1 | −178.7 (4) | C7—N1—Co1—O3 | 30.7 (4) |
| O5—C9—N2—C8 | 0.8 (7) | C3—N1—Co1—O3 | −152.3 (4) |
| C10—C9—N2—C8 | −178.3 (4) | C7—N1—Co1—O2ii | −92.7 (11) |
| C6—C8—N2—C9 | 64.2 (6) | C3—N1—Co1—O2ii | 84.3 (11) |
| O6—C10—N3—C11 | 1.6 (7) | C7—N1—Co1—O4i | −50.0 (4) |
| C9—C10—N3—C11 | −177.5 (4) | C3—N1—Co1—O4i | 127.0 (4) |
| C12—C11—N3—C10 | −77.4 (6) | C7—N1—Co1—N4iv | 124.2 (4) |
| C14—C15—N4—C16 | −1.2 (9) | C3—N1—Co1—N4iv | −58.8 (4) |
| H··· | ||||
| N3—H3···O6v | 0.86 | 2.14 | 2.863 (5) | 142 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3⋯O6i | 0.86 | 2.14 | 2.863 (5) | 142 |
Symmetry code: (i) .