Literature DB >> 25305580

Probing protein disorder and complexity at single-molecule resolution.

Taehyung Lee1, Crystal R Moran-Gutierrez1, Ashok A Deniz2.   

Abstract

A substantial fraction of the human proteome encodes disordered proteins. Protein disorder is associated with a variety of cellular functions and misfunction, and is therefore of clear import to biological systems. However, disorder lends itself to conformational flexibility and heterogeneity, rendering proteins which feature prominent disorder difficult to study using conventional structural biology methods. Here we discuss a few examples of how single-molecule methods are providing new insight into the biophysics and complexity of these proteins by avoiding ensemble averaging, thereby providing direct information about the complex distributions and dynamics of this important class of proteins. Examples of note include characterization of isolated IDPs in solution as collapsed and dynamic species, detailed insight into complex IDP folding landscapes, and new information about how tunable regulation of structure-mediated binding cooperativity and consequent function can be achieved through protein disorder. With these exciting advances in view, we conclude with a discussion of a few complementary and emerging single-molecule efforts of particular promise, including complementary and enhanced methodologies for studying disorder in proteins, and experiments to investigate the potential role for IDP-induced phase separation as a critical functional element in biological systems.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Allostery; Intrinsically disordered proteins; Protein Folding; Protein dynamics; Single-molecule

Mesh:

Substances:

Year:  2014        PMID: 25305580      PMCID: PMC4339442          DOI: 10.1016/j.semcdb.2014.09.027

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  57 in total

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4.  Spatial organization of the cell cytoplasm by position-dependent phase separation.

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5.  Single-molecule force spectroscopy of rapidly fluctuating, marginally stable structures in the intrinsically disordered protein α-synuclein.

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Journal:  Phys Rev Lett       Date:  2014-04-16       Impact factor: 9.161

6.  Single molecule study of the intrinsically disordered FG-repeat nucleoporin 153.

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Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

7.  Interplay of alpha-synuclein binding and conformational switching probed by single-molecule fluorescence.

Authors:  Allan Chris M Ferreon; Yann Gambin; Edward A Lemke; Ashok A Deniz
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8.  Myelin membrane assembly is driven by a phase transition of myelin basic proteins into a cohesive protein meshwork.

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Journal:  PLoS Biol       Date:  2013-06-04       Impact factor: 8.029

9.  Diverse metastable structures formed by small oligomers of α-synuclein probed by force spectroscopy.

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3.  Biophysical characterization of the structural change of Nopp140, an intrinsically disordered protein, in the interaction with CK2α.

Authors:  Jung-Hyun Na; Won-Kyu Lee; Yuyoung Kim; Cherlhyun Jeong; Seung Soo Song; Sun-Shin Cha; Kyou-Hoon Han; Yeon-Kyun Shin; Yeon Gyu Yu
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Review 4.  Deciphering Complexity in Molecular Biophysics with Single-Molecule Resolution.

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Review 5.  Phase separation in biology; functional organization of a higher order.

Authors:  Diana M Mitrea; Richard W Kriwacki
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Review 6.  Single Molecule FRET: A Powerful Tool to Study Intrinsically Disordered Proteins.

Authors:  Sharonda J LeBlanc; Prakash Kulkarni; Keith R Weninger
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7.  Intrinsically disordered proteins (IDPs) in trypanosomatids.

Authors:  Patrícia de Cássia Ruy; Raul Torrieri; Juliano Simões Toledo; Viviane de Souza Alves; Angela Kaysel Cruz; Jeronimo Conceição Ruiz
Journal:  BMC Genomics       Date:  2014-12-13       Impact factor: 3.969

Review 8.  When fast is better: protein folding fundamentals and mechanisms from ultrafast approaches.

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Review 9.  How Do We Study the Dynamic Structure of Unstructured Proteins: A Case Study on Nopp140 as an Example of a Large, Intrinsically Disordered Protein.

Authors:  Jung-Hyun Na; Won-Kyu Lee; Yeon Gyu Yu
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10.  Intrinsically Disordered Proteins: Insights from Poincaré, Waddington, and Lamarck.

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  10 in total

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