| Literature DB >> 25305068 |
Stanley Tamaki, Christopher Nye, Euan Slorach, David Scharp, Helen M Blau, Phyllis E Whiteley, Jason H Pomerantz1.
Abstract
BACKGROUND: Human pancreatic islet structure poses challenges to investigations that require specific modulation of gene expression. Yet dissociation of islets into individual cells destroys cellular interactions important to islet physiology. Approaches that improve transient targeting of gene expression in intact human islets are needed in order to effectively perturb intracellular pathways to achieve biological effects in the most relevant tissue contexts.Entities:
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Year: 2014 PMID: 25305068 PMCID: PMC4287515 DOI: 10.1186/1472-6750-14-86
Source DB: PubMed Journal: BMC Biotechnol ISSN: 1472-6750 Impact factor: 2.563
Figure 1Electroporation and siRNA delivery in intact human islets. (A) Graph showing RT-qPCR results of RB knockdown following lipid or electroporation transfection. Intact human islets were transfected with non-targeting control siRNA (D-001810 ON-TARGETplus from Thermo Fisher/Dharmacon) or siRNA targeting RB (L-003296) using lipid (Dharmafect 1 from Thermo Fisher/Dharmacon) or electroporation (Neon Transfection System from Life Technologies), cultured for two days, and RT-qPCR was performed to assess knockdown. Error bars indicate SEM (n = 3 separate experiments). (B) Graph showing representative results of glucose stimulation of insulin secretion assay. Intact islets were electroporated with control, non-targeting siRNA at a range of voltages (x-axis) and a glucose stimulation of insulin secretion assay was performed 72 hours following electroporation. Media was collected after exposure to 3 mM glucose (light gray bars), then after switch to 20 mM glucose (gray bars), followed by return to 3 mM glucose (black bars), and total insulin (hatched bars). (C) Images showing morphological comparison between non-electroporated (left) and electroporated (right) islets. Images of islets stained with hematoxylin and eosin (top), immunostained for for c-peptide (red) and nuclei DAPI (blue)(middle), and after exposure to ethidium bromide to test viability 72 hours after electroporation (bottom).
TaqMan PCR primers and probes
| Primer/Probe | Sequence |
|---|---|
| RB F1 | 5′- GGAAGCAACCCTCCTAAACC - 3′ |
| RB R1 | 5′ - TTTCTGCTTTTGCATTCGTG - 3′ |
| RB probe | 5′ - [6-FAM] CATCTCCCAGGAGAGTCCAA [BHQ1a-6FAM] - 3′ |
| p107 F1 | 5′ – AGAATGCCTCCTGGACCTTT - 3′ |
| p107 R1 | 5′ – GGGGTGTCACGAGTGAACTT - 3′ |
| p107 probe | 5′ - [6-FAM] ACGCAGAAGAGGAAATTGGA [BHQ1a-6FAM] - 3′ |
| p130 F1 | 5′ – ATTTGGCATGGAAACCAGAG - 3′ |
| p130 R1 | 5′ – GTCACCCTTCTGGGAGTCAA - 3′ |
| p130 probe | 5′ - [6-FAM] AGAACCTGGAAAGGGCAGAT [BHQ1a-6FAM] - 3′ |
| p21 F1 | 5′ – AGAGGAGGCGCCATGTCAG - 3′ |
| p21 R1 | 5′ – CATTAGCGCATCACAGTCGC - 3′ |
| p21 probe | 5′ - 6-FAM] CAGAACCCATGCGGCAGCAA [BHQ1a-Q] - 3′ |
| p53 F1 | 5′ – GTGGAAGGAAATTTGCGTGT - 3′ |
| p53 R1 | 5′ – CCAGTGTGATGATGGTGAGG - 3′ |
| p53 probe | 5′ - [6-FAM] ACATAGTGTGGTGGTGCCCT [BHQ1a-Q] - 3′ |
| ARF F1 | 5′ – AGGGTTTTCGTGGTTCACAT - 3′ |
| ARF R1 | 5′ – CTGCCCATCATCATGACC - 3′ |
| ARF probe | 5′ - [6-FAM] CGATCCAGGTCCATGATGATG [BHQ1a-6FAM] - 3′ |
| GAPDH F1 | 5′ – GAGTCAACGGATTTGGTCGT - 3′ |
| GAPDH R1 | 5′ – TTGATTTTGGAGGGATCTCG - 3′ |
| GAPDH probe | 5′ - [6-FAM] CTGAGAACGGGAAGCTTGTC [BHQ1a-6FAM] - 3′ |
Figure 2Simultaneous knockdown of multiple genes in primary human islets following electroporation. (A) Graph shows RT-qPCR results of islets electroporated with non-targeting control siRNA or siRNA targeting RB and p130 (L-003299). (B) Graph shows RT-qPCR results of islets electroporated with non-targeted control siRNA or siRNAs targeting the indicated gene products. The housekeeping gene GAPDH was used as the control. Representative experiment shown from 3 separate experiments. Error bars indicate standard deviation. (C) Western blot for RB protein in human islet lysates after electroporation of control or targeting siRNA. GAPDH was used as a loading control. RB appears as a characteristic doublet representing the hypo and hyperphosphorylated protein. Representative experiment shown from 3 different experiments.
Figure 3Cell cycle reentry in primary human islets following knockdown of RB and p53 pathway members. Primary human islets were electroporated with siRNAs against non-targeting control, or combinations of RB, p107 (L-003298), p130 (L-003299), p21 (L-003471), p53 (L-003329) and ARF/CDKN2A (L-011007). Islets were cultured in the presence of 5-ethynyl-2′-deoxyuridine (EdU) for 7 days following electroporation then fixed and stained with DAPI and for EdU. (A) Images showing EdU incorporation in Islets with nuclei stained with DAPI (blue, left), EdU (red, middle) and a composite image (right). (B) Graph showing percentage of EdU incorporating cells in islets following transfection. Total cells counted in the representative experiment presented are: siControl (245); Rb + p53 (535); Rbfamily + p53 + p21 (456); Rbfamily + p53 + p21 + Arf (834). The experiment was repeated 3 separate times.