Literature DB >> 25305015

An annular lipid belt is essential for allosteric coupling and viral inhibition of the antigen translocation complex TAP (transporter associated with antigen processing).

Sabine Eggensperger1, Olivier Fisette2, David Parcej1, Lars V Schäfer2, Robert Tampé3.   

Abstract

The transporter associated with antigen processing (TAP) constitutes a focal element in the adaptive immune response against infected or malignantly transformed cells. TAP shuttles proteasomal degradation products into the lumen of the endoplasmic reticulum for loading of major histocompatibility complex (MHC) class I molecules. Here, the heterodimeric TAP complex was purified and reconstituted in nanodiscs in defined stoichiometry. We demonstrate that a single heterodimeric core-TAP complex is active in peptide binding, which is tightly coupled to ATP hydrolysis. Notably, with increasing peptide length, the ATP turnover was gradually decreased, revealing that ATP hydrolysis is coupled to the movement of peptide through the ATP-binding cassette transporter. In addition, all-atom molecular dynamics simulations show that the observed 22 lipids are sufficient to form an annular belt surrounding the TAP complex. This lipid belt is essential for high affinity inhibition by the herpesvirus immune evasin ICP47. In conclusion, nanodiscs are a powerful approach to study the important role of lipids as well as the function, interaction, and modulation of the antigen translocation machinery.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  ATP-binding Cassette Transporter; Antigen Processing; Herpesvirus; Lipid Bilayer; Membrane Protein; Membrane Transport; Membrane Transporter Reconstitution; Peptide Transport; Transporter

Mesh:

Substances:

Year:  2014        PMID: 25305015      PMCID: PMC4246070          DOI: 10.1074/jbc.M114.592832

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  54 in total

1.  The active domain of the herpes simplex virus protein ICP47: a potent inhibitor of the transporter associated with antigen processing.

Authors:  L Neumann; W Kraas; S Uebel; G Jung; R Tampé
Journal:  J Mol Biol       Date:  1997-10-03       Impact factor: 5.469

2.  Translocation of long peptides by transporters associated with antigen processing (TAP).

Authors:  J O Koopmann; M Post; J J Neefjes; G J Hämmerling; F Momburg
Journal:  Eur J Immunol       Date:  1996-08       Impact factor: 5.532

3.  Preparation of microsomal membranes for cotranslational protein translocation.

Authors:  P Walter; G Blobel
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

4.  Modified lipid and protein dynamics in nanodiscs.

Authors:  Karsten Mörs; Christian Roos; Frank Scholz; Josef Wachtveitl; Volker Dötsch; Frank Bernhard; Clemens Glaubitz
Journal:  Biochim Biophys Acta       Date:  2012-12-28

Review 5.  ABC transporters in adaptive immunity.

Authors:  Fabian Seyffer; Robert Tampé
Journal:  Biochim Biophys Acta       Date:  2014-06-09

6.  Molecular mechanism and species specificity of TAP inhibition by herpes simplex virus ICP47.

Authors:  K Ahn; T H Meyer; S Uebel; P Sempé; H Djaballah; Y Yang; P A Peterson; K Früh; R Tampé
Journal:  EMBO J       Date:  1996-07-01       Impact factor: 11.598

7.  Functional dissection of the transmembrane domains of the transporter associated with antigen processing (TAP).

Authors:  Joachim Koch; Renate Guntrum; Susanne Heintke; Christoph Kyritsis; Robert Tampé
Journal:  J Biol Chem       Date:  2003-12-15       Impact factor: 5.157

8.  Human transporters associated with antigen processing possess a promiscuous peptide-binding site.

Authors:  M J Androlewicz; P Cresswell
Journal:  Immunity       Date:  1994-04       Impact factor: 31.745

9.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06

10.  Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipids.

Authors:  Joakim P M Jämbeck; Alexander P Lyubartsev
Journal:  J Phys Chem B       Date:  2012-03-01       Impact factor: 2.991

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  9 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

Review 2.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

3.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

4.  Emerging Diversity in Lipid-Protein Interactions.

Authors:  Valentina Corradi; Besian I Sejdiu; Haydee Mesa-Galloso; Haleh Abdizadeh; Sergei Yu Noskov; Siewert J Marrink; D Peter Tieleman
Journal:  Chem Rev       Date:  2019-02-13       Impact factor: 60.622

5.  A subset of annular lipids is linked to the flippase activity of an ABC transporter.

Authors:  Chérine Bechara; Anne Nöll; Nina Morgner; Matteo T Degiacomi; Robert Tampé; Carol V Robinson
Journal:  Nat Chem       Date:  2015-02-02       Impact factor: 24.427

6.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

7.  A dual inhibition mechanism of herpesviral ICP47 arresting a conformationally thermostable TAP complex.

Authors:  Valentina Herbring; Anja Bäucker; Simon Trowitzsch; Robert Tampé
Journal:  Sci Rep       Date:  2016-11-15       Impact factor: 4.379

8.  Attenuation of Phosphorylation-dependent Activation of Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) by Disease-causing Mutations at the Transmission Interface.

Authors:  Stephanie Chin; Donghe Yang; Andrew J Miles; Paul D W Eckford; Steven Molinski; B A Wallace; Christine E Bear
Journal:  J Biol Chem       Date:  2016-12-21       Impact factor: 5.157

9.  Self-assembly of nanoscale particles with biosurfactants and membrane scaffold proteins.

Authors:  Ramona Faas; Annelie Pohle; Karin Moß; Marius Henkel; Rudolf Hausmann
Journal:  Biotechnol Rep (Amst)       Date:  2017-09-01
  9 in total

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