| Literature DB >> 25303901 |
Grzegorz Zaleśny1, Joanna Hildebrand2, Anna Paziewska-Harris3, Jerzy M Behnke4, Philip D Harris5.
Abstract
BACKGROUND: Heligmosomoides polygyrus is a widespread gastro-intestinal nematode infecting wild Apodemus (wood mice) throughout Europe. Using molecular and morphological evidence, we review the status of Heligmosomoides from Apodemus agrarius in Poland previously considered to be an outlying clade of H. polygyrus, to further resolve the status of the laboratory model species, H. bakeri.Entities:
Mesh:
Year: 2014 PMID: 25303901 PMCID: PMC4198666 DOI: 10.1186/s13071-014-0457-y
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Material sequenced during this study
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| Mokry Dwór, Wrocław | Poland | 51°04′57 N | 17°06′13E |
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| Gdańsk | Poland | 54°21′19 N | 18°48′20E |
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| Jar | Norway | 59°55′15 N | 10°37′46E |
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| Weybourne Lodge Camp, Norfolk | UK | 52°55′43 N | 1°09′11E |
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| Kildare | Eire | 53°09′45 N | 6°55′07 W |
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| Mokry Dwór, Wrocław | Poland | 51°04′57 N | 17°06′13E |
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| Trabzon-Sumela Road | Turkey | 40°50′00 N | 39°42′00E |
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| Moredun Institute Edinburgh | UK | 55°54′53 N | 3°07′26E |
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| Nottingham laboratory colony | |||
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| Anglesey | UK | 53°10′55 N | 4°10′40 W |
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| Urwitałt forest, | Poland | 53°47′51 N | 21°39′07E |
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| Mokry Dwór, Wrocław | Poland | 51°04′57 N | 17°06′13E |
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| Mokry Dwór, Wrocław | Poland | 51°04′57 N | 17°06′13E |
Primer pairs used in the study (F- forward, R- reversed)
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| F: GGTCAACAAATCATAAAGATATTGG | 559 | [ |
| R: TAAACTTCAGGGTGACCAAAAAATCA | |||
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| F: GRAATTTTGGTAGTATRTTRG | 616 | [ |
| R: AGMACGYAAAATWGYAWAAGC | |||
| ITS1 | F: TTGAACCGGGTAAAGTCGT | 387 – 423 | [ |
| R: ACAACCCTGAACCAGACGTG | |||
| ITS2 | F: ACGTCTGGTTCAGGGTTGT | 276 – 306 | [ |
| R: TTAGTTTCTTTTCCTCCGCT | |||
| 28S rDNA | F: ACCCGCTGAATTTAAGCAT | 619 | [ |
| R: TCCGTGTTTCAAGACGG |
Sequences of Heligmosomidae used in phylogenetic analysis
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| Gdańsk, Poland | KF765455 | KF765451 | KF765458 | KF765463 | KF765468 | This study |
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| Wrocław, Poland | KJ994541 | KJ994551 | This study | |||
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| Wrocław, Poland | KF765456 | KF765452 | KF765459 | KF765464 | KF765469 | This study |
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| Jar, Norway | KJ994543 | KJ994553 | KJ994557 | KJ994560 | Identical to KF765469 | This study |
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| Kildare, Eire | KJ994542 | KJ994548 | This study | |||
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| Norfolk | KJ994544 | KJ994549 | KJ994555 | KJ994558 | Identical to KF765469 | This study |
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| 98911It, Italy | AM409071 | AM409087 | ND | 9 | ||
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| Slovakia 11112Sa | ND | AM408297 | 10 | |||
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| France 10192 F | ND | AM408288 | 10 | |||
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| Pancas, Portugal | KJ994545 | KJ994550 | This study | |||
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| Minorca 7672Mi | ND | AJ971171 | 11 | |||
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| Nottingham strain | DQ408627 | KJ994554 | DQ408624 | DQ408624 | AM039747 | 5 |
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| Maizels genome project 3 | Contig 252200 | Contig 252200 | ||||
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| Turkey | AM409074 | AM409090 | ND | 11 | ||
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| Turkey | KJ994540 | KJ994547 | KJ994556 | KJ994559 | KJ994539 | This study |
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| Corsica 9702 F3 | ND | AJ971230 | 11 | |||
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| Edinburgh, Scotland UK | KF765457 | KF765453 | KF765460 | KF765465 | KF765470 | This study |
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| Urwitałt Forest, Poland | DQ408634 | ND | 5 | |||
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| Anglesey, Wales, UK | KJ994546 | KJ94552 | This study | |||
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| Japan | ND | AJ971146 | AM409077 | AM409093 | ND | 10 |
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| Wrocław, Poland | ND | KF765454 | KF765461 | KF765466 | KF765471 | This study |
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| Mazury, Poland | DQ408635 | ND | 5 | |||
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| Spain 1340 | ND | AJ971145 | 11 | |||
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| Wrocław, Poland | KF765462 | KF765467 | KF765472 | This study | ||
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| Russia, Bouriatia | AY332647 | AY333381 | AF210038, AF210014, AF209991 | 20 |
1This subspecies was originally described from Mus musculus domesticus from Corsica; however, ITS1 and ITS2 sequences are available only for parasites collected from Apodemus mystacinus from Turkey and linked to specimens from Corsica by identity of their cytb sequences ([11]).
2Sequences for H. p. polygyrus Jar and H. bakeri cytb are truncated relative to the other isolates.
3Sequence obtained through 959 Nematode Genome project (http://www.nematodes.org/nematodegenomes/index.php/959_Nematode_Genomes). ND indicates sequence not available for inclusion in the concatenated alignments (mitochondrial or nuclear). A blank cell indicates a taxon not included in the relevant alignment.
Figure 1The morphology of A) a cross section through the mid-region of H. polygyrus female; B) a cross section through the mid-region of H. neopolygyrus female; In both cases, the worm is oriented with the head away from the viewer, with the dorsal surface at the top of the image. Slender black arrows indicate the ventral crête of the respective worms; the short black arrows indicate the ventral left-hand quadrant where the crête is largest in H. polygyrus but not in H. neopolygyrus. C) bursa of H. neopolygyrus; D) bursa of H. polygyrus; White arrows indicate the externo-dorsal rays, showing the enlarged base in H. polygyrus but the filiform ray present in H. neopolygyrus.
Figure 2Phylogenetic analysis of the representatives of the Heligmosomidae. A) concatenated nuclear (28S rDNA, ITS1, 5.8S and ITS2) loci, B) concatenated mitochondrial loci (partial CO1 and cytb genes) The analysis was performed using the Maximum Likelihood algorithm within the RaxML package implemented via the CIPRES gateway. Bootstrap support calculated on basis of 500 replicates (only values above 60% shown).