Literature DB >> 25302920

Nonmonotonic diffusion of particles among larger attractive crowding spheres.

Gregory Garbès Putzel1, Mario Tagliazucchi1, Igal Szleifer1.   

Abstract

We study the diffusive motion of particles among fixed spherical crowders. The diffusers interact with the crowders through a combination of a hard-core repulsion and a short-range attraction. The long-time effective diffusion coefficient of the diffusers is found to depend nonmonotonically on the strength of their attraction to the crowders. That is, for a given concentration of crowders, a weak attraction to the crowders enhances diffusion. We show that this counterintuitive fact can be understood in terms of the mesoscopic excess chemical potential landscape experienced by the diffuser. The roughness of this excess chemical potential landscape quantitatively captures the nonmonotonic dependence of the diffusion rate on the strength of crowder-diffuser attraction; thus, it is a purely static predictor of dynamic behavior. The mesoscopic view given here provides a unified explanation for enhanced diffusion effects that have been found in various systems of technological and biological interest.

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Year:  2014        PMID: 25302920      PMCID: PMC4670031          DOI: 10.1103/PhysRevLett.113.138302

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  19 in total

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Review 5.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

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  8 in total

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Review 3.  Molecular simulations of cellular processes.

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5.  Structural Basis of Enhanced Facilitated Diffusion of DNA-Binding Protein in Crowded Cellular Milieu.

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6.  Crowding within synaptic junctions influences the degradation of nucleotides by CD39 and CD73 ectonucleotidases.

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7.  Quantifying the Influence of the Crowded Cytoplasm on Small Molecule Diffusion.

Authors:  Peter M Kekenes-Huskey; Caitlin E Scott; Selcuk Atalay
Journal:  J Phys Chem B       Date:  2016-07-07       Impact factor: 2.991

8.  Co-localization and confinement of ecto-nucleotidases modulate extracellular adenosine nucleotide distributions.

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Journal:  PLoS Comput Biol       Date:  2020-06-25       Impact factor: 4.475

  8 in total

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