Literature DB >> 25301849

NOVA: a software to analyze complexome profiling data.

Heiko Giese1, Jörg Ackermann1, Heinrich Heide2, Lea Bleier1, Stefan Dröse1, Ilka Wittig2, Ulrich Brandt2, Ina Koch1.   

Abstract

SUMMARY: We introduce nova, a software for the analysis of complexome profiling data. nova supports the investigation of the composition of complexes, cluster analysis of the experimental data, visual inspection and comparison of experiments and many other features.
AVAILABILITY AND IMPLEMENTATION: nova is licensed under the Artistic License 2.0. It is freely available at http://www.bioinformatik.uni-frankfurt.de. nova requires at least Java 7 and runs under Linux, Microsoft Windows and Mac OS. CONTACT: ina.koch@bioinformatik.uni-frankfurt.de.
© The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Mesh:

Year:  2014        PMID: 25301849     DOI: 10.1093/bioinformatics/btu623

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  22 in total

1.  Complexome Profiling Reveals Association of PPR Proteins with Ribosomes in the Mitochondria of Plants.

Authors:  Nils Rugen; Henryk Straube; Linda E Franken; Hans-Peter Braun; Holger Eubel
Journal:  Mol Cell Proteomics       Date:  2019-04-25       Impact factor: 5.911

2.  Redox-Dependent Loss of Flavin by Mitochondrial Complex I in Brain Ischemia/Reperfusion Injury.

Authors:  Anna Stepanova; Sergey Sosunov; Zoya Niatsetskaya; Csaba Konrad; Anatoly A Starkov; Giovanni Manfredi; Ilka Wittig; Vadim Ten; Alexander Galkin
Journal:  Antioxid Redox Signal       Date:  2019-07-01       Impact factor: 8.401

3.  Degradation of the mitochondrial complex I assembly factor TMEM126B under chronic hypoxia.

Authors:  Dominik C Fuhrmann; Ilka Wittig; Stefan Dröse; Tobias Schmid; Nathalie Dehne; Bernhard Brüne
Journal:  Cell Mol Life Sci       Date:  2018-02-20       Impact factor: 9.261

4.  Complexome Profiling of Plant Mitochondrial Fractions.

Authors:  Lucie Schröder; Holger Eubel; Hans-Peter Braun
Journal:  Methods Mol Biol       Date:  2022

5.  Multiple pathways coordinate assembly of human mitochondrial complex IV and stabilization of respiratory supercomplexes.

Authors:  Teresa Lobo-Jarne; Rafael Pérez-Pérez; Flavia Fontanesi; Alba Timón-Gómez; Ilka Wittig; Ana Peñas; Pablo Serrano-Lorenzo; Inés García-Consuegra; Joaquín Arenas; Miguel A Martín; Antoni Barrientos; Cristina Ugalde
Journal:  EMBO J       Date:  2020-06-08       Impact factor: 11.598

6.  Deactivation of mitochondrial complex I after hypoxia-ischemia in the immature brain.

Authors:  Anna Stepanova; Csaba Konrad; Sergio Guerrero-Castillo; Giovanni Manfredi; Susan Vannucci; Susanne Arnold; Alexander Galkin
Journal:  J Cereb Blood Flow Metab       Date:  2018-04-09       Impact factor: 6.960

7.  The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein.

Authors:  Kim-Kristin Prior; Ilka Wittig; Matthias S Leisegang; Jody Groenendyk; Norbert Weissmann; Marek Michalak; Pidder Jansen-Dürr; Ajay M Shah; Ralf P Brandes
Journal:  J Biol Chem       Date:  2016-02-09       Impact factor: 5.157

8.  Cytochrome c Oxidase Biogenesis and Metallochaperone Interactions: Steps in the Assembly Pathway of a Bacterial Complex.

Authors:  Sonja Schimo; Ilka Wittig; Klaas M Pos; Bernd Ludwig
Journal:  PLoS One       Date:  2017-01-20       Impact factor: 3.240

9.  Mic13 Is Essential for Formation of Crista Junctions in Mammalian Cells.

Authors:  Ruchika Anand; Valentina Strecker; Jennifer Urbach; Ilka Wittig; Andreas S Reichert
Journal:  PLoS One       Date:  2016-08-01       Impact factor: 3.240

10.  Cristae architecture is determined by an interplay of the MICOS complex and the F1FO ATP synthase via Mic27 and Mic10.

Authors:  Katharina Eydt; Karen M Davies; Christina Behrendt; Ilka Wittig; Andreas S Reichert
Journal:  Microb Cell       Date:  2017-07-20
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