Literature DB >> 25300994

On the electron affinity of cytosine in bulk water and at hydrophobic aqueous interfaces.

Esteban Vöhringer-Martinez1, Ciro Dörner, Bernd Abel.   

Abstract

In the past one possible mechanism of DNA damage in bulk water has been attributed to the presence of hydrated electrons in water. Recently, one important property of hydrated electrons, namely their binding energy, was reported to be smaller at hydrophobic interfaces than in bulk aqueous solution. This possibly opens up new reaction possibilities with different solutes such as the DNA at hydrophobic, aqueous interfaces. Here, we use QM/MM molecular dynamics simulation to study how the molecular environment at the vacuum-water interface and in the bulk alters the electron affinity of cytosine being a characteristic part of the DNA. The electron affinity at the interface is closer to the corresponding binding energy of the partially hydrated electron. The increased energy resonance makes the electron capture process more probable and suggests that hydrated electrons at hydrophobic interfaces may be more reactive than the fully hydrated ones. Additionally, we found that the relaxation of the anionic form after electron attachment also induces a proton transfer from the surrounding solvent that was confirmed by comparison with the experimental reduction potential.

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Year:  2014        PMID: 25300994     DOI: 10.1007/s00894-014-2453-8

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  23 in total

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5.  Canonical sampling through velocity rescaling.

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Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

6.  Real-time observation of a molecular reaction mechanism of aqueous 5-Halo-2'-deoxyuridines under UV/ionizing radiation.

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7.  On the effect of low-energy electron induced DNA strand break in aqueous solution: a theoretical study indicating guanine as a weak link in DNA.

Authors:  Patric Schyman; Aatto Laaksonen
Journal:  J Am Chem Soc       Date:  2008-08-21       Impact factor: 15.419

8.  Tautomerism of nucleic acid bases. I. Cytosine.

Authors:  G C Lee; J H Prestegard; S I Chan
Journal:  J Am Chem Soc       Date:  1972-02-09       Impact factor: 15.419

9.  Effects of microsolvation on the adenine-uracil base pair and its radical anion: adenine-uracil mono- and dihydrates.

Authors:  Sunghwan Kim; Henry F Schaefer
Journal:  J Phys Chem A       Date:  2007-08-18       Impact factor: 2.781

10.  Bond breaks of nucleotides by dissociative electron transfer of nonequilibrium prehydrated electrons: a new molecular mechanism for reductive DNA damage.

Authors:  Chun-Rong Wang; Jenny Nguyen; Qing-Bin Lu
Journal:  J Am Chem Soc       Date:  2009-08-19       Impact factor: 15.419

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