Literature DB >> 25298789

Semantically Interoperable XML Data.

Cristobal Vergara-Niedermayr1, Fusheng Wang2, Tony Pan2, Tahsin Kurc2, Joel Saltz2.   

Abstract

XML is ubiquitously used as an information exchange platform for web-based applications in healthcare, life sciences, and many other domains. Proliferating XML data are now managed through latest native XML database technologies. XML data sources conforming to common XML schemas could be shared and integrated with syntactic interoperability. Semantic interoperability can be achieved through semantic annotations of data models using common data elements linked to concepts from ontologies. In this paper, we present a framework and software system to support the development of semantic interoperable XML based data sources that can be shared through a Grid infrastructure. We also present our work on supporting semantic validated XML data through semantic annotations for XML Schema, semantic validation and semantic authoring of XML data. We demonstrate the use of the system for a biomedical database of medical image annotations and markups.

Entities:  

Keywords:  Biomedical Data Management; Data Integration; Semantic Interoperability; XML Database

Year:  2013        PMID: 25298789      PMCID: PMC4185431          DOI: 10.1142/S1793351X13500037

Source DB:  PubMed          Journal:  Int J Semant Comput


  7 in total

1.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

2.  An Adaptable XML Based Approach for Scientific Data Management and Integration.

Authors:  Fusheng Wang; Florian Thiel; Daniel Furrer; Cristobal Vergara-Niedermayr; Chen Qin; Georg Hackenberg; Pierre-Emmanuel Bourgue; David Kaltschmidt; Mo Wang
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2008-02-20

3.  ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.

Authors:  David J Foran; Lin Yang; Wenjin Chen; Jun Hu; Lauri A Goodell; Michael Reiss; Fusheng Wang; Tahsin Kurc; Tony Pan; Ashish Sharma; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2011-05-23       Impact factor: 4.497

4.  Managing and Querying Image Annotation and Markup in XML.

Authors:  Fusheng Wang; Tony Pan; Ashish Sharma; Joel Saltz
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-01-01

5.  XML-based approaches for the integration of heterogeneous bio-molecular data.

Authors:  Marco Mesiti; Ernesto Jiménez-Ruiz; Ismael Sanz; Rafael Berlanga-Llavori; Paolo Perlasca; Giorgio Valentini; David Manset
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

6.  A data model and database for high-resolution pathology analytical image informatics.

Authors:  Fusheng Wang; Jun Kong; Lee Cooper; Tony Pan; Tahsin Kurc; Wenjin Chen; Ashish Sharma; Cristobal Niedermayr; Tae W Oh; Daniel Brat; Alton B Farris; David J Foran; Joel Saltz
Journal:  J Pathol Inform       Date:  2011-07-26

7.  The caBIG annotation and image Markup project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Kastubh Sepukar; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2009-03-18       Impact factor: 4.056

  7 in total
  1 in total

1.  Open data models for smart health interconnected applications: the example of openEHR.

Authors:  Hans Demski; Sebastian Garde; Claudia Hildebrand
Journal:  BMC Med Inform Decis Mak       Date:  2016-10-22       Impact factor: 2.796

  1 in total

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