Literature DB >> 25297050

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany.

Sandra Orchard1, Juan Pablo Albar, Pierre-Alain Binz, Carsten Kettner, Andrew R Jones, Reza M Salek, Juan Antonio Vizcaino, Eric W Deutsch, Henning Hermjakob.   

Abstract

The Annual 2014 Spring Workshop of the Proteomics Standards Initiative (PSI) of the Human Proteome Organization (HUPO) was held this year jointly with the metabolomics COordination of Standards in MetabOlomicS (COSMOS) group. The range of existing MS standards (mzML, mzIdentML, mzQuantML, mzTab, TraML) was reviewed and updated in the light of new methodologies and advances in technologies. Adaptations to meet the needs of the metabolomics community were incorporated and a new data format for NMR, nmrML, was presented. The molecular interactions workgroup began work on a new version of the existing XML data interchange format. PSI-MI XML3.0 will enable the capture of more abstract data types such as protein complex topology derived from experimental data, allosteric binding, and dynamic interactions. Further information about the work of the HUPO-PSI can be found at http://www.psidev.info.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2014        PMID: 25297050     DOI: 10.1002/pmic.201470164

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  6 in total

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6.  Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

Authors:  M Sivade Dumousseau; D Alonso-López; M Ammari; G Bradley; N H Campbell; A Ceol; G Cesareni; C Combe; J De Las Rivas; N Del-Toro; J Heimbach; H Hermjakob; I Jurisica; M Koch; L Licata; R C Lovering; D J Lynn; B H M Meldal; G Micklem; S Panni; P Porras; S Ricard-Blum; B Roechert; L Salwinski; A Shrivastava; J Sullivan; N Thierry-Mieg; Y Yehudi; K Van Roey; S Orchard
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  6 in total

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