Literature DB >> 25294832

Mechanical force antagonizes the inhibitory effects of RecX on RecA filament formation in Mycobacterium tuberculosis.

Shimin Le1, Hu Chen2, Xinghua Zhang3, Jin Chen4, K Neelakanteshwar Patil5, Kalappa Muniyappa6, Jie Yan7.   

Abstract

Efficient bacterial recombinational DNA repair involves rapid cycles of RecA filament assembly and disassembly. The RecX protein plays a crucial inhibitory role in RecA filament formation and stability. As the broken ends of DNA are tethered during homologous search, RecA filaments assembled at the ends are likely subject to force. In this work, we investigated the interplay between RecX and force on RecA filament formation and stability. Using magnetic tweezers, at single molecular level, we found that Mycobacterium tuberculosis (Mt) RecX could catalyze stepwise de-polymerization of preformed MtRecA filament in the presence of ATP hydrolysis at low forces (<7 pN). However, applying larger forces antagonized the inhibitory effects of MtRecX, and a partially de-polymerized MtRecA filament could re-polymerize in the presence of MtRecX, which cannot be explained by previous models. Theoretical analysis of force-dependent conformational free energies of naked ssDNA and RecA nucleoprotein filament suggests that mechanical force stabilizes RecA filament, which provides a possible mechanism for the observation. As the antagonizing effect of force on the inhibitory function of RecX takes place in a physiological range; these findings broadly suggest a potential mechanosensitive regulation during homologous recombination.
© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2014        PMID: 25294832      PMCID: PMC4231760          DOI: 10.1093/nar/gku899

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

1.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

2.  Direct observation of individual RecA filaments assembling on single DNA molecules.

Authors:  Roberto Galletto; Ichiro Amitani; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Nature       Date:  2006-09-20       Impact factor: 49.962

3.  Functional characterization of the precursor and spliced forms of RecA protein of Mycobacterium tuberculosis.

Authors:  R A Kumar; M B Vaze; N R Chandra; M Vijayan; K Muniyappa
Journal:  Biochemistry       Date:  1996-02-13       Impact factor: 3.162

Review 4.  Bacterial chromosome organization and segregation.

Authors:  Esteban Toro; Lucy Shapiro
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02       Impact factor: 10.005

5.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

6.  Real-time observation of RecA filament dynamics with single monomer resolution.

Authors:  Chirlmin Joo; Sean A McKinney; Muneaki Nakamura; Ivan Rasnik; Sua Myong; Taekjip Ha
Journal:  Cell       Date:  2006-08-11       Impact factor: 41.582

7.  Dynamics of RecA filaments on single-stranded DNA.

Authors:  Marijn T J van Loenhout; Thijn van der Heijden; Roland Kanaar; Claire Wyman; Cees Dekker
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

Review 8.  Regulation of bacterial RecA protein function.

Authors:  Michael M Cox
Journal:  Crit Rev Biochem Mol Biol       Date:  2007 Jan-Feb       Impact factor: 8.250

9.  Dynamics and Regulation of RecA Polymerization and De-Polymerization on Double-Stranded DNA.

Authors:  Hongxia Fu; Shimin Le; Kalappa Muniyappa; Jie Yan
Journal:  PLoS One       Date:  2013-06-18       Impact factor: 3.240

10.  RecA bundles mediate homology pairing between distant sisters during DNA break repair.

Authors:  Christian Lesterlin; Graeme Ball; Lothar Schermelleh; David J Sherratt
Journal:  Nature       Date:  2013-12-22       Impact factor: 49.962

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  8 in total

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Authors:  Giulia Manina; Anna Griego; Lalit Kumar Singh; John D McKinney; Neeraj Dhar
Journal:  EMBO J       Date:  2019-10-04       Impact factor: 11.598

2.  A new insight into RecA filament regulation by RecX from the analysis of conformation-specific interactions.

Authors:  Aleksandr Alekseev; Georgii Pobegalov; Natalia Morozova; Alexey Vedyaykin; Galina Cherevatenko; Alexander Yakimov; Dmitry Baitin; Mikhail Khodorkovskii
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3.  Mechanochemical regulations of RPA's binding to ssDNA.

Authors:  Jin Chen; Shimin Le; Anindita Basu; Walter J Chazin; Jie Yan
Journal:  Sci Rep       Date:  2015-03-19       Impact factor: 4.379

4.  Disturbance-free rapid solution exchange for magnetic tweezers single-molecule studies.

Authors:  Shimin Le; Mingxi Yao; Jin Chen; Artem K Efremov; Sara Azimi; Jie Yan
Journal:  Nucleic Acids Res       Date:  2015-05-24       Impact factor: 16.971

5.  Bacillus subtilis RecA with DprA-SsbA antagonizes RecX function during natural transformation.

Authors:  Shimin Le; Ester Serrano; Ryo Kawamura; Begoña Carrasco; Jie Yan; Juan C Alonso
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

6.  Elucidating the functional role of Mycobacterium smegmatis recX in stress response.

Authors:  Deepika Prasad; Divya Arora; Vinay Kumar Nandicoori; K Muniyappa
Journal:  Sci Rep       Date:  2019-07-29       Impact factor: 4.379

Review 7.  Targeting evolution of antibiotic resistance by SOS response inhibition.

Authors:  Alexander Yakimov; Irina Bakhlanova; Dmitry Baitin
Journal:  Comput Struct Biotechnol J       Date:  2021-01-11       Impact factor: 7.271

8.  Parallel triplex structure formed between stretched single-stranded DNA and homologous duplex DNA.

Authors:  Jin Chen; Qingnan Tang; Shiwen Guo; Chen Lu; Shimin Le; Jie Yan
Journal:  Nucleic Acids Res       Date:  2017-09-29       Impact factor: 16.971

  8 in total

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