Literature DB >> 25292357

Messenger RNA degradation in bacterial cells.

Monica P Hui1, Patricia L Foley, Joel G Belasco.   

Abstract

mRNA degradation is an important mechanism for controlling gene expression in bacterial cells. This process involves the orderly action of a battery of cellular endonucleases and exonucleases, some universal and others present only in certain species. These ribonucleases function with the assistance of ancillary enzymes that covalently modify the 5' or 3' end of RNA or unwind base-paired regions. Triggered by initiating events at either the 5' terminus or an internal site, mRNA decay occurs at diverse rates that are transcript specific and governed by RNA sequence and structure, translating ribosomes, and bound sRNAs or proteins. In response to environmental cues, bacteria are able to orchestrate widespread changes in mRNA lifetimes by modulating the concentration or specific activity of cellular ribonucleases or by unmasking the mRNA-degrading activity of cellular toxins.

Entities:  

Keywords:  gene regulation; mRNA stability; ribonuclease; sRNA; translation

Mesh:

Substances:

Year:  2014        PMID: 25292357      PMCID: PMC4431577          DOI: 10.1146/annurev-genet-120213-092340

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  163 in total

1.  A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs.

Authors:  Yong Li; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-29       Impact factor: 11.205

2.  Structural insights into the dual activity of RNase J.

Authors:  Inés Li de la Sierra-Gallay; Léna Zig; Ailar Jamalli; Harald Putzer
Journal:  Nat Struct Mol Biol       Date:  2008-01-20       Impact factor: 15.369

3.  Catalytic properties of RNase BN/RNase Z from Escherichia coli: RNase BN is both an exo- and endoribonuclease.

Authors:  Tanmay Dutta; Murray P Deutscher
Journal:  J Biol Chem       Date:  2009-04-14       Impact factor: 5.157

4.  The roles of individual domains of RNase R in substrate binding and exoribonuclease activity. The nuclease domain is sufficient for digestion of structured RNA.

Authors:  Helen A Vincent; Murray P Deutscher
Journal:  J Biol Chem       Date:  2008-11-11       Impact factor: 5.157

5.  Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover.

Authors:  Gintaras Deikus; Ciarán Condon; David H Bechhofer
Journal:  J Biol Chem       Date:  2008-04-29       Impact factor: 5.157

6.  YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity.

Authors:  Kwang-sun Kim; Robert Manasherob; Stanley N Cohen
Journal:  Genes Dev       Date:  2008-12-15       Impact factor: 11.361

7.  Heterodimer-based analysis of subunit and domain contributions to double-stranded RNA processing by Escherichia coli RNase III in vitro.

Authors:  Wenzhao Meng; Allen W Nicholson
Journal:  Biochem J       Date:  2008-02-15       Impact factor: 3.857

8.  Mechanism of mRNA destabilization by the glmS ribozyme.

Authors:  Jennifer A Collins; Irnov Irnov; Stephanie Baker; Wade C Winkler
Journal:  Genes Dev       Date:  2007-12-15       Impact factor: 11.361

9.  The RNase E of Escherichia coli is a membrane-binding protein.

Authors:  Vanessa Khemici; Leonora Poljak; Ben F Luisi; Agamemnon J Carpousis
Journal:  Mol Microbiol       Date:  2008-10-02       Impact factor: 3.501

10.  Regulation of Escherichia coli polynucleotide phosphorylase by ATP.

Authors:  Marta Del Favero; Elisa Mazzantini; Federica Briani; Sandro Zangrossi; Paolo Tortora; Gianni Dehò
Journal:  J Biol Chem       Date:  2008-07-23       Impact factor: 5.157

View more
  89 in total

1.  Distinct Requirements for 5'-Monophosphate-assisted RNA Cleavage by Escherichia coli RNase E and RNase G.

Authors:  Jamie Richards; Joel G Belasco
Journal:  J Biol Chem       Date:  2015-12-22       Impact factor: 5.157

2.  Maturation of polycistronic mRNAs by the endoribonuclease RNase Y and its associated Y-complex in Bacillus subtilis.

Authors:  Aaron DeLoughery; Jean-Benoît Lalanne; Richard Losick; Gene-Wei Li
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-24       Impact factor: 11.205

3.  Identification of the RNA Pyrophosphohydrolase RppH of Helicobacter pylori and Global Analysis of Its RNA Targets.

Authors:  Thorsten Bischler; Ping-Kun Hsieh; Marcus Resch; Quansheng Liu; Hock Siew Tan; Patricia L Foley; Anika Hartleib; Cynthia M Sharma; Joel G Belasco
Journal:  J Biol Chem       Date:  2016-12-14       Impact factor: 5.157

4.  Both exo- and endo-nucleolytic activities of RNase J1 from Staphylococcus aureus are manganese dependent and active on triphosphorylated 5'-ends.

Authors:  Stéphane Hausmann; Vanessa Andrade Guimarães; Dominique Garcin; Natalia Baumann; Patrick Linder; Peter Redder
Journal:  RNA Biol       Date:  2017-03-01       Impact factor: 4.652

5.  GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation.

Authors:  Kook Han; Brian Tjaden; Stephen Lory
Journal:  Nat Microbiol       Date:  2016-12-22       Impact factor: 17.745

6.  Highly motif- and organism-dependent effects of naturally occurring hammerhead ribozyme sequences on gene expression.

Authors:  Lena A Wurmthaler; Benedikt Klauser; Jörg S Hartig
Journal:  RNA Biol       Date:  2017-12-08       Impact factor: 4.652

7.  Obstacles to Scanning by RNase E Govern Bacterial mRNA Lifetimes by Hindering Access to Distal Cleavage Sites.

Authors:  Jamie Richards; Joel G Belasco
Journal:  Mol Cell       Date:  2019-03-06       Impact factor: 17.970

8.  BR-Bodies Provide Selectively Permeable Condensates that Stimulate mRNA Decay and Prevent Release of Decay Intermediates.

Authors:  Nadra Al-Husini; Dylan T Tomares; Zechariah J Pfaffenberger; Nisansala S Muthunayake; Mohammad A Samad; Tiancheng Zuo; Obaidah Bitar; James R Aretakis; Mohammed-Husain M Bharmal; Alisa Gega; Julie S Biteen; W Seth Childers; Jared M Schrader
Journal:  Mol Cell       Date:  2020-04-27       Impact factor: 17.970

9.  RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli.

Authors:  Jaejin Lee; Dong-Ho Lee; Che Ok Jeon; Kangseok Lee
Journal:  J Microbiol       Date:  2019-09-30       Impact factor: 3.422

10.  The Endoribonuclease RNase E Coordinates Expression of mRNAs and Small Regulatory RNAs and Is Critical for the Virulence of Brucella abortus.

Authors:  Lauren M Sheehan; James A Budnick; Jaquille Fyffe-Blair; Kellie A King; Robert E Settlage; Clayton C Caswell
Journal:  J Bacteriol       Date:  2020-09-23       Impact factor: 3.490

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.