| Literature DB >> 25292282 |
Patricio López-Sepúlveda1, Koji Takayama, Josef Greimler, Daniel J Crawford, Patricio Peñailillo, Marcelo Baeza, Eduardo Ruiz, Gudrun Kohl, Karin Tremetsberger, Alejandro Gatica, Luis Letelier, Patricio Novoa, Johannes Novak, Tod F Stuessy.
Abstract
A common mode of speciation in oceanic islands is by anagenesis, wherein an immigrant arrives and through time transforms by mutation, recombination, and drift into a morphologically and genetically distinct species, with the new species accumulating a high level of genetic diversity. We investigate speciation in Drimys confertifolia, endemic to the two major islands of the Juan Fernández Archipelago, Chile, to determine genetic consequences of anagenesis, to examine relationships among populations of D. confertifolia and the continental species D. winteri and D. andina, and to test probable migration routes between the major islands. Population genetic analyses were conducted using AFLPs and nuclear microsatellites of 421 individuals from 42 populations from the Juan Fernández islands and the continent. Drimys confertifolia shows a wide genetic variation within populations on both islands, and values of genetic diversity within populations are similar to those found within populations of the continental progenitor. The genetic results are compatible with the hypothesis of high levels of genetic variation accumulating within anagenetically derived species in oceanic islands, and with the concept of little or no geographical partitioning of this variation over the landscape. Analysis of the probability of migration within the archipelago confirms colonization from the older island, Robinson Crusoe, to the younger island Alejandro Selkirk.Entities:
Mesh:
Year: 2014 PMID: 25292282 PMCID: PMC4300435 DOI: 10.1007/s10265-014-0666-7
Source DB: PubMed Journal: J Plant Res ISSN: 0918-9440 Impact factor: 2.629
Fig. 1Geographical position of populations sampled of Drimys winteri and D. andina in continental Chile (a) and Drimys confertifolia in Robinson Crusoe (b) and Alejandro Selkirk (c) Islands
Fig. 2Habitats and flowers (insets) of D. confertifolia on Robinson Crusoe Island (a), D. confertifolia on Alejandro Selkirk Island (b), D. andina (c), and Drimys winteri var. winteri (d)
Values of genetic diversity and divergence based on AFLP and nuclear microsatellite analysis in 42 populations of Drimys confertifolia, D. andina, D. winteri var. winteri and D. winteri var. chilensis
| AFLPs | Microsatellites | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Taxon and vouchers |
| N° | PPB | TNB | SDI | AGDOL | RI | NPB | N° |
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| 19130 | 1 | 11 | 68.4 | 442 | 106.84 | 0.26 | 1.64 | 0 | 10 | 0.44 | 0.66 | 0.29* | 4.50 | 4.73 | 0.63 | 0.00 | 0.75 |
| 19134 | 2 | 12 | 70.7 | 456 | 109.33 | 0.25 | 1.71 | 2 | 12 | 0.48 | 0.67 | 0.25* | 4.88 | 4.23 | 0.64 | 0.00 | 0.50 |
| 19185 | 3 | 12 | 66.6 | 441 | 105.65 | 0.25 | 1.56 | 0 | 12 | 0.50 | 0.64 | 0.21 | 4.88 | 4.35 | 0.61 | 0.00 | 0.50 |
| 19173 | 4 | 10 | 66.9 | 448 | 108.55 | 0.26 | 1.79 | 1 | 10 | 0.46 | 0.68 | 0.29* | 5.25 | 4.79 | 0.65 | 0.13 | 0.63 |
| 19209 | 5 | 14 | 67.6 | 431 | 99.91 | 0.23 | 1.44 | 0 | 15 | 0.52 | 0.66 | 0.19* | 5.00 | 4.16 | 0.64 | 0.00 | 0.75 |
| 19108 | 6 | 11 | 71.7 | 453 | 114.60 | 0.27 | 1.59 | 0 | 11 | 0.51 | 0.67 | 0.24 | 5.50 | 4.30 | 0.64 | 0.13 | 0.88 |
| 19191 | 7 | 10 | 70.3 | 445 | 112.58 | 0.28 | 1.78 | 1 | 10 | 0.45 | 0.64 | 0.28* | 4.75 | 4.25 | 0.61 | 0.00 | 0.63 |
| 19290 | 8 | 4 | 42.4 | 319 | 76.58 | 0.23 | 1.27 | 0 | 3 | 0.54 | 0.68 | 0.00 | 3.13 | – | 0.57 | 0.00 | 0.63 |
| 19284 | 9 | 9 | 60.0 | 404 | 96.89 | 0.23 | 1.34 | 0 | 9 | 0.46 | 0.52 | 0.02 | 4.00 | 4.06 | 0.49 | 0.00 | 0.63 |
| 19227 | 10 | 12 | 67.4 | 426 | 103.15 | 0.24 | 1.41 | 1 | 13 | 0.48 | 0.68 | 0.26* | 5.38 | 4.47 | 0.65 | 0.00 | 1.00 |
| 19275 | 11 | 15 | 72.9 | 451 | 111.59 | 0.25 | 1.59 | 0 | 15 | 0.43 | 0.53 | 0.15 | 4.25 | 3.99 | 0.52 | 0.00 | 0.75 |
| 19197 | 12 | 8 | 55.2 | 390 | 90.76 | 0.23 | 1.36 | 0 | 8 | 0.31 | 0.66 | 0.48* | 4.38 | 4.64 | 0.62 | 0.00 | 0.63 |
| 19268 | 13 | 14 | 67.9 | 430 | 102.99 | 0.24 | 1.35 | 0 | 13 | 0.49 | 0.62 | 0.13 | 4.63 | 4.52 | 0.60 | 0.00 | 0.50 |
| 19256 | 14 | 14 | 65.2 | 435 | 100.53 | 0.23 | 1.41 | 0 | 14 | 0.47 | 0.68 | 0.26* | 5.50 | 4.04 | 0.66 | 0.25 | 0.63 |
| 19260 | 15 | 14 | 66.9 | 434 | 102.29 | 0.23 | 1.37 | 0 | 14 | 0.54 | 0.67 | 0.13 | 5.50 | 3.45 | 0.65 | 0.13 | 1.50 |
| 19248 | 16 | 14 | 63.6 | 416 | 94.05 | 0.22 | 1.38 | 1 | 15 | 0.60 | 0.66 | 0.04 | 4.88 | 3.61 | 0.64 | 0.00 | 1.00 |
| Average (±SD) | 66.8 (±4.5) | 433.5 (±18.5) | 103.98 (±6.88) | 0.24 (±0.17) | 1.50 (±1.61) | 0.40 (±0.63) | 0.48 (±0.063) | 0.64 (±0.051) | 0.21 (±0.11) | 4.89 (±0.48) | 4.24 (±0.38) | 0.62 (±0.049) | 0.04 (±0.078) | 0.75 (±0.26) | |||
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| 20041 | 17 | 9 | 54.5 | 398 | 86.01 | 0.21 | 1.69 | 0 | 10 | 0.40 | 0.51 | 0.16 | 4.25 | 3.25 | 0.48 | 0.00 | 0.50 |
| 20014 | 18 | 17 | 73.8 | 474 | 108.87 | 0.25 | 2.02 | 0 | 16 | 0.31 | 0.48 | 0.19* | 4.13 | 3.50 | 0.46 | 0.00 | 0.63 |
| 20013 | 19 | 1 | 0.0 | 220 | 0.00 | 0.00 | 0.00 | 0 | 1 | 0.63 | 0.63 | –1.00 | 1.63 | – | 0.31 | 0.00 | 0.38 |
| 19813 | 20 | 2 | 24.7 | 302 | 49.91 | 0.25 | 1.60 | 0 | 3 | 0.29 | 0.33 | –0.14 | 1.88 | – | 0.27 | 0.00 | 0.25 |
| 20005 | 21 | 3 | 28.8 | 328 | 54.71 | 0.19 | 1.88 | 0 | 3 | 0.21 | 0.49 | 0.35 | 2.25 | – | 0.41 | 0.00 | 0.38 |
| 20023 | 22 | 1 | 0.0 | 154 | 0.00 | 0.00 | 0.00 | 1 | 1 | 0.38 | 0.38 | –1.00 | 1.38 | – | 0.19 | 0.00 | 0.00 |
| 19803 | 23 | 10 | 54.2 | 409 | 85.89 | 0.20 | 1.69 | 0 | 10 | 0.38 | 0.44 | 0.14 | 3.13 | 3.27 | 0.42 | 0.00 | 0.13 |
| 19638 | 24 | 1 | 0.0 | 258 | 0.00 | 0.00 | 0.00 | 0 | 1 | 0.50 | 0.50 | –1.00 | 1.50 | – | 0.25 | 0.00 | 0.13 |
| 19810 | 25 | 3 | 28.1 | 327 | 53.25 | 0.19 | 2.06 | 1 | 3 | 0.29 | 0.43 | 0.10 | 2.25 | – | 0.36 | 0.00 | 0.13 |
| 20049 | 26 | 3 | 30.9 | 319 | 59.49 | 0.21 | 1.58 | 0 | 3 | 0.33 | 0.46 | 0.11 | 2.38 | – | 0.38 | 0.00 | 0.00 |
| 19616 | 27 | 2 | 23.7 | 272 | 47.83 | 0.24 | 1.47 | 0 | 2 | 0.50 | 0.58 | –0.14 | 2.25 | – | 0.44 | 0.00 | 0.00 |
| 19652 | 28 | 8 | 57.3 | 431 | 90.75 | 0.23 | 2.14 | 0 | 7 | 0.41 | 0.59 | 0.26 | 3.25 | 3.25 | 0.54 | 0.00 | 0.50 |
| 19656 | 29 | 9 | 61.2 | 440 | 92.61 | 0.23 | 2.17 | 0 | 12 | 0.30 | 0.52 | 0.29* | 4.00 | 2.89 | 0.50 | 0.00 | 0.50 |
| 19657 | 30 | 19 | 65.4 | 426 | 96.56 | 0.21 | 1.59 | 1 | 18 | 0.36 | 0.49 | 0.19* | 4.13 | 3.31 | 0.48 | 0.13 | 0.88 |
| 19658 | 31 | 8 | 45.1 | 325 | 73.05 | 0.18 | 1.05 | 0 | 7 | 0.27 | 0.44 | 0.27 | 3.25 | 3.79 | 0.41 | 0.00 | 0.38 |
| Average (±SD) | 58.8 (±9.2) | 414.7 (±46.4) | 90.53 (±10.99) | 0.22 (±0.02) | 1.76 (±0.39) | 0.14 (±0.38) | 0.35 (±0.05) | 0.50 (±0.05) | 0.21 (±0.06) | 3.73 (±0.50) | 3.3 (±0.27) | 0.47 (±0.045) | 0.02 (±0.05) | 0.50 (±0.23) | |||
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| 4324 | 32 | 16 | 60.4 | 383 | 91.92 | 0.20 | 1.18 | 0 | 13 | 0.37 | 0.49 | 0.17 | 4.13 | 3.92 | 0.48 | 0.25 | 1.00 |
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| 4 | 33 | 14 | 55.6 | 344 | 82.73 | 0.18 | 1.19 | 1 | 13 | 0.38 | 0.65 | 0.41* | 4.63 | 3.83 | 0.63 | 0.00 | 0.75 |
| 4314 | 34 | 14 | 37.7 | 243 | 60.36 | 0.14 | 0.78 | 0 | 13 | 0.44 | 0.69 | 0.33* | 5.13 | 3.71 | 0.66 | 0.00 | 1.63 |
| 4301 | 35 | 12 | 47.0 | 301 | 73.14 | 0.17 | 0.99 | 0 | 11 | 0.53 | 0.62 | 0.07 | 4.13 | 4.24 | 0.59 | 0.00 | 0.75 |
| 4300 | 36 | 12 | 47.2 | 302 | 70.04 | 0.16 | 1.03 | 1 | 12 | 0.51 | 0.60 | 0.11 | 4.38 | 4.65 | 0.58 | 0.00 | 0.75 |
| 2426 | 37 | 11 | 45.8 | 299 | 71.45 | 0.17 | 1.01 | 0 | 11 | 0.44 | 0.58 | 0.14 | 4.25 | 4.54 | 0.56 | 0.13 | 1.00 |
| 4321 | 38 | 15 | 40.3 | 264 | 61.32 | 0.14 | 0.76 | 0 | 13 | 0.37 | 0.69 | 0.44* | 5.63 | 4.09 | 0.66 | 0.25 | 1.63 |
| 4330 | 39 | 18 | 53.0 | 320 | 81.65 | 0.18 | 0.84 | 0 | 18 | 0.49 | 0.69 | 0.27* | 6.00 | 3.75 | 0.67 | 0.00 | 1.75 |
| 2401 | 40 | 8 | 58.8 | 355 | 101.19 | 0.24 | 1.04 | 1 | 10 | 0.49 | 0.60 | 0.11 | 4.63 | 3.84 | 0.57 | 0.13 | 1.13 |
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| 2402 | 41 | 10 | 41.7 | 272 | 64.47 | 0.16 | 0.92 | 0 | 10 | 0.58 | 0.58 | –0.05 | 3.75 | 3.53 | 0.55 | 0.00 | 0.50 |
| 2420 | 42 | 12 | 43.2 | 303 | 66.76 | 0.15 | 0.97 | 0 | 12 | 0.46 | 0.55 | 0.09 | 4.63 | 3.44 | 0.52 | 0.00 | 1.00 |
| Average (±SD) | 47.0 (±6.9) | 300.3 (±34.5) | 73.31 (±12.39) | 0.17 (±0.03) | 0.95 (±0.13) | 0.3 (±0.48) | 0.47 (±0.06) | 0.62 (±0.05) | 0.19 (±0.16) | 4.71 (±0.69) | 3.96 (±0.41) | 0.60 (±0.05) | 0.05 (±0.09) | 1.09 (±0.44) | |||
Population data in italics, with four or fewer individuals, were not included in the statistical analyses
N assigned population number, N° number of individuals analyzed, PPB percentage of polymorphic bands, TNB total number of bands, SDI Shannon diversity index, AGDOL average gene diversity over loci, RI rarity index, NPB number of private bands, H O observed heterozygosity, µH expected heterozygosity, F inbreeding coefficient, N number of alleles per locus, A allelic richness, H expected proportion of heterozygotes, N number of private alleles, N number of locally common alleles (freq. ≥5 %) found in 25 % or fewer populations, – no data because the number was calculated with populations that contained seven or more individuals, * significant F IS values (P < 0.05) after Bonferroni correction
Genetic diversity with AFLP and microsatellites for Drimys confertifolia, D. winteri, and D. andina
| Species | AFLP | Microsatellites |
|---|---|---|
| AGDOL |
| |
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| 0.259 | 0.685 |
|
| 0.234 | 0.509 |
|
| 0.276 | 0.675 |
|
| 0.208 | 0.733 |
|
| 0.203 | 0.501 |
AGDOL average gene diversity over loci, H expected proportion of heterozygotes
F ST values among Drimys confertifolia in Robinson Crusoe and Alejandro Selkirk Island, D. andina, and D. winteri
|
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|---|---|---|---|---|
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| 0.186 | 0.204 | 0.266 | |
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| 0.150 | 0.263 | 0.357 | |
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| 0.245 | 0.283 | 0.203 | |
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| 0.060 | 0.101 | 0.179 |
Above diagonal are estimates from AFLP data, below diagonal from microsatellites
RC Robinson Crusoe Island, AS Alejandro Selkirk Island
Summary of analyses of molecular variance (AMOVA) for AFLPs and microsatellites in Drimys confertifolia
| Source of variation | AFLPs | Microsatellites | ||||||
|---|---|---|---|---|---|---|---|---|
|
| SS | Variance components | Total variance (%) |
| SS | Variance components | Total variance (%) | |
| Between islands | 1 | 1925.61 | 16.19 | 17.97 | 1 | 102.7 | 0.4 | 14.61 |
| Among populations within island | 20 | 2,592.67 | 5.22 | 5.79 | 20 | 119.2 | 0.2 | 5.09 |
| Within populations | 237 | 16,278.05 | 68.68 | 76.24 | 500 | 1,194.8 | 2.4 | 50.30 |
The total variance contributed by each component (%), and its associated significance (n = 1,023 permutations) are shown
df degrees of freedom, SS sum of squares
Fig. 3Genetic relationships among populations of Drimys. SplitsTree NeighbourNet (phylogenetic network) of AFLP data showing relationships among individuals of D. andina, D. confertifolia, D. winteri var. chilensis and D. winteri var. andina (a), and Neighbour-Joining tree based on microsatellites showing relationships among populations in the same species of Drimys (b)
Fig. 4Genetic affinities from AFLP and microsatellite data among populations of Drimys confertifolia on both islands (a), on Robinson Crusoe Island (b), and Alejandro Selkirk Island (c) by means of STRUCTURE (all K = 2)
Results of comparison of different migration models between the two islands for Drimys confertifolia
| Model | Bézier approximation score | Harmonic mean | Model rank | |||
|---|---|---|---|---|---|---|
| ln (mL) | LBF | Model rank | ln (mL) | LBF | ||
| M0: no migration | −313,478 | 284,888 | 3 | −24,451 | 21,324 | 3 |
| M1: migration from Alejandro Selkirk to Robinson Crusoe | −29,489 | 899 | 2 | −5,894 | 2,767 | 2 |
| M2: migration from Robinson Crusoe to Alejandro Selkirk | −28,590 | 0 | 1 | −3,127 | 0 | 1 |
The model rank with 1 is the preferred model
ln (mL) log marginal likelihoods, LBF log Bayes factor [=ln (marginal likelihood of M0) − ln (marginal likelihood of Mn)]