Literature DB >> 25286952

Purification, crystallization and preliminary X-ray crystallographic studies of Drep2 CIDE domain.

Seung Mi Lee1, Hyun Ho Park1.   

Abstract

Drep2 is a novel nuclease from the fruit fly that might have a similar function in apoptosis to DFF40 and DFF45, which are primary players in apoptotic DNA fragmentation. Drep2 contains a conserved CIDE domain of ∼90 amino-acid residues that is involved in protein-protein interaction. In this study, the Drep2 CIDE domain was purified and crystallized by the hanging-drop vapour-diffusion method. X-ray diffraction data were then collected to a resolution of 2.3 Å. The crystals were found to belong to the orthorhombic space group P212121, with unit-cell parameters a = 50.28, b = 88.70, c = 113.37 Å.

Entities:  

Keywords:  CIDE domain; DNA fragmentation factor; Drep2; Drosophila melanogaster; apoptosis

Mesh:

Substances:

Year:  2014        PMID: 25286952      PMCID: PMC4188092          DOI: 10.1107/S2053230X14019165

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  20 in total

1.  Structure of the heterodimeric complex between CAD domains of CAD and ICAD.

Authors:  T Otomo; H Sakahira; K Uegaki; S Nagata; T Yamazaki
Journal:  Nat Struct Biol       Date:  2000-08

Review 2.  Structural analyses of death domains and their interactions.

Authors:  Hyun Ho Park
Journal:  Apoptosis       Date:  2011-03       Impact factor: 4.677

Review 3.  The death domain superfamily in intracellular signaling of apoptosis and inflammation.

Authors:  Hyun Ho Park; Yu-Chih Lo; Su-Chang Lin; Liwei Wang; Jin Kuk Yang; Hao Wu
Journal:  Annu Rev Immunol       Date:  2007       Impact factor: 28.527

4.  In vitro analysis of the complete CIDE domain interactions of the Drep system in fly.

Authors:  Seung Mi Lee; Hyun Ho Park
Journal:  Apoptosis       Date:  2014-03       Impact factor: 4.677

5.  General interaction mode of CIDE:CIDE complex revealed by a mutation study of the Drep2 CIDE domain.

Authors:  Seung Mi Lee; Hyun Ho Park
Journal:  FEBS Lett       Date:  2013-02-26       Impact factor: 4.124

6.  Solution structure of the CIDE-N domain of CIDE-B and a model for CIDE-N/CIDE-N interactions in the DNA fragmentation pathway of apoptosis.

Authors:  A A Lugovskoy; P Zhou; J J Chou; J S McCarty; P Li; G Wagner
Journal:  Cell       Date:  1999-12-23       Impact factor: 41.582

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 8.  Which CIDE are you on? Apoptosis and energy metabolism.

Authors:  Tomo Yonezawa; Riho Kurata; Minoru Kimura; Hidetoshi Inoko
Journal:  Mol Biosyst       Date:  2010-10-22

9.  Molecular evolution of Cide family proteins: novel domain formation in early vertebrates and the subsequent divergence.

Authors:  Congyang Wu; Yinxin Zhang; Zhirong Sun; Peng Li
Journal:  BMC Evol Biol       Date:  2008-05-23       Impact factor: 3.260

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  1 in total

1.  CIDE domains form functionally important higher-order assemblies for DNA fragmentation.

Authors:  Jae Young Choi; Qi Qiao; Se-Hoon Hong; Chang Min Kim; Jae-Hee Jeong; Yeon-Gil Kim; Yong-Keun Jung; Hao Wu; Hyun Ho Park
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.