Literature DB >> 25286942

Purification and X-ray crystallographic analysis of 7-keto-8-aminopelargonic acid (KAPA) synthase from Mycobacterium smegmatis.

Shanghua Fan1, Defeng Li2, Joy Fleming2, Yuan Hong2, Tao Chen3, Lin Zhou3, Lijun Bi2, Dacheng Wang2, Xianen Zhang2, Guanjun Chen1.   

Abstract

7-Keto-8-aminopelargonic acid synthase (KAPA synthase; BioF) is an essential enzyme for mycobacterial growth that catalyses the first committed step in the biotin-synthesis pathway. It is a pyridoxal 5'-phosphate (PLP)-dependent enzyme and is a potential drug target. Here, the cloning, expression, purification and crystallization of KAPA synthase from Mycobacterium smegmatis (MsBioF) and the characterization of MsBioF crystals using X-ray diffraction are described. The crystals diffracted to 2.3 Å resolution and belonged to the monoclinic space group P21, with unit-cell parameters a = 70.88, b = 91.68, c = 109.84 Å, β = 97.8°. According to the molecular weight of MsBioF, the unit-cell parameters and the self-rotation function map, four molecules are present in each asymmetric unit with a VM value of 2.06 Å(3) Da(-1) and a solvent content of 40.20%.

Entities:  

Keywords:  7-keto-8-aminopelargonic acid (KAPA) synthase; Mycobacterium smegmatis; biotin-synthesis pathway

Mesh:

Substances:

Year:  2014        PMID: 25286942      PMCID: PMC4188082          DOI: 10.1107/S2053230X14018317

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  15 in total

1.  Mechanism of 8-amino-7-oxononanoate synthase: spectroscopic, kinetic, and crystallographic studies.

Authors:  S P Webster; D Alexeev; D J Campopiano; R M Watt; M Alexeeva; L Sawyer; R L Baxter
Journal:  Biochemistry       Date:  2000-01-25       Impact factor: 3.162

2.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

3.  Identification and characterization of Rv3281 as a novel subunit of a biotin-dependent acyl-CoA Carboxylase in Mycobacterium tuberculosis H37Rv.

Authors:  Tae-Jin Oh; Jaiyanth Daniel; Hwa-Jung Kim; Tatiana D Sirakova; Pappachan E Kolattukudy
Journal:  J Biol Chem       Date:  2005-12-14       Impact factor: 5.157

4.  Biotin synthesis begins by hijacking the fatty acid synthetic pathway.

Authors:  Steven Lin; Ryan E Hanson; John E Cronan
Journal:  Nat Chem Biol       Date:  2010-08-08       Impact factor: 15.040

5.  Genetic requirements for mycobacterial survival during infection.

Authors:  Christopher M Sassetti; Eric J Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

6.  The crystal structure of 8-amino-7-oxononanoate synthase: a bacterial PLP-dependent, acyl-CoA-condensing enzyme.

Authors:  D Alexeev; M Alexeeva; R L Baxter; D J Campopiano; S P Webster; L Sawyer
Journal:  J Mol Biol       Date:  1998-11-27       Impact factor: 5.469

7.  Investigation of the first step of biotin biosynthesis in Bacillus sphaericus. Purification and characterization of the pimeloyl-CoA synthase, and uptake of pimelate.

Authors:  O Ploux; P Soularue; A Marquet; R Gloeckler; Y Lemoine
Journal:  Biochem J       Date:  1992-11-01       Impact factor: 3.857

8.  Mechanistic studies on the 8-amino-7-oxopelargonate synthase, a pyridoxal-5'-phosphate-dependent enzyme involved in biotin biosynthesis.

Authors:  O Ploux; A Marquet
Journal:  Eur J Biochem       Date:  1996-02-15

Review 9.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  1 in total

1.  Analysis of In Vivo Transcriptome of Intracellular Bacterial Pathogen Salmonella enterica serovar Typhmurium Isolated from Mouse Spleen.

Authors:  Na Sun; Yanying Song; Cong Liu; Mengda Liu; Lanping Yu; Fangkun Wang
Journal:  Pathogens       Date:  2021-06-30
  1 in total

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