Literature DB >> 25286940

Cloning, expression, purification, crystallization and preliminary X-ray diffraction of a lysine-specific permease from Pseudomonas aeruginosa.

Emmanuel Nji1, Dianfan Li1, Declan A Doyle1, Martin Caffrey1.   

Abstract

The prokaryotic lysine-specific permease (LysP) belongs to the amino acid-polyamine-organocation (APC) transporter superfamily. In the cell, members of this family are responsible for the uptake and recycling of nutrients, for the maintenance of a constant internal ion concentration and for cell volume regulation. The detailed mechanism of substrate selectivity and transport of L-lysine by LysP is not understood. A high-resolution crystal structure would enormously facilitate such an understanding. To this end, LysP from Pseudomonas aeruginosa was recombinantly expressed in Escherichia coli and purified to near homogeneity by immobilized metal ion-affinity chromatography (IMAC) and size-exclusion chromatography (SEC). Hexagonal- and rod-shaped crystals were obtained in the presence of L-lysine and the L-lysine analogue L-4-thialysine by vapour diffusion and diffracted to 7.5 Å resolution. The diffraction data were indexed in space group P21, with unit-cell parameters a = 169.53, b = 169.53, c = 290.13 Å, γ = 120°.

Entities:  

Keywords:  APC transporter superfamily; GFP fusion; LysP; membrane protein

Mesh:

Substances:

Year:  2014        PMID: 25286940      PMCID: PMC4188080          DOI: 10.1107/S2053230X14017865

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  18 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Structure and mechanism of a glutamate-GABA antiporter.

Authors:  Dan Ma; Peilong Lu; Chuangye Yan; Chao Fan; Ping Yin; Jiawei Wang; Yigong Shi
Journal:  Nature       Date:  2012-03-11       Impact factor: 49.962

3.  A hidden Markov model for predicting transmembrane helices in protein sequences.

Authors:  E L Sonnhammer; G von Heijne; A Krogh
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1998

4.  A L-lysine transporter of high stereoselectivity of the amino acid-polyamine-organocation (APC) superfamily: production, functional characterization, and structure modeling.

Authors:  Jagdeep Kaur; Elena Olkhova; Viveka Nand Malviya; Ernst Grell; Hartmut Michel
Journal:  J Biol Chem       Date:  2013-11-20       Impact factor: 5.157

5.  Membrane protein structure determination using crystallography and lipidic mesophases: recent advances and successes.

Authors:  Martin Caffrey; Dianfan Li; Abhiram Dukkipati
Journal:  Biochemistry       Date:  2012-07-31       Impact factor: 3.162

6.  Detergent binding explains anomalous SDS-PAGE migration of membrane proteins.

Authors:  Arianna Rath; Mira Glibowicka; Vincent G Nadeau; Gong Chen; Charles M Deber
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

7.  Detergent binding as a measure of hydrophobic surface area of integral membrane proteins.

Authors:  J V Møller; M le Maire
Journal:  J Biol Chem       Date:  1993-09-05       Impact factor: 5.157

8.  Structure and mechanism of an amino acid antiporter.

Authors:  Xiang Gao; Feiran Lu; Lijun Zhou; Shangyu Dang; Linfeng Sun; Xiaochun Li; Jiawei Wang; Yigong Shi
Journal:  Science       Date:  2009-05-28       Impact factor: 47.728

9.  How to measure and predict the molar absorption coefficient of a protein.

Authors:  C N Pace; F Vajdos; L Fee; G Grimsley; T Gray
Journal:  Protein Sci       Date:  1995-11       Impact factor: 6.725

10.  Benchmarking membrane protein detergent stability for improving throughput of high-resolution X-ray structures.

Authors:  Yo Sonoda; Simon Newstead; Nien-Jen Hu; Yilmaz Alguel; Emmanuel Nji; Konstantinos Beis; Shoko Yashiro; Chiara Lee; James Leung; Alexander D Cameron; Bernadette Byrne; So Iwata; David Drew
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.