Literature DB >> 25285268

Using Animal Instincts to Design Efficient Biomedical Studies via Particle Swarm Optimization.

Jiaheng Qiu1, Ray-Bing Chen2, Weichung Wang3, Weng Kee Wong4.   

Abstract

Particle swarm optimization (PSO) is an increasingly popular metaheuristic algorithm for solving complex optimization problems. Its popularity is due to its repeated successes in finding an optimum or a near optimal solution for problems in many applied disciplines. The algorithm makes no assumption of the function to be optimized and for biomedical experiments like those presented here, PSO typically finds the optimal solutions in a few seconds of CPU time on a garden-variety laptop. We apply PSO to find various types of optimal designs for several problems in the biological sciences and compare PSO performance relative to the differential evolution algorithm, another popular metaheuristic algorithm in the engineering literature.

Entities:  

Keywords:  Approximate design; D-optimal design; c-optimal design; efficiency; metaheuristic algorithms; particle swarm optimization

Year:  2014        PMID: 25285268      PMCID: PMC4180414          DOI: 10.1016/j.swevo.2014.06.003

Source DB:  PubMed          Journal:  Swarm Evol Comput        ISSN: 2210-6502            Impact factor:   7.177


  10 in total

1.  An evaluation of population D-optimal designs via pharmacokinetic simulations.

Authors:  Andrew C Hooker; Marco Foracchia; Michael G Dodds; Paolo Vicini
Journal:  Ann Biomed Eng       Date:  2003-01       Impact factor: 3.934

2.  Optimal design of clinical trials comparing several treatments with a control.

Authors:  Ian C Marschner
Journal:  Pharm Stat       Date:  2007 Jan-Mar       Impact factor: 1.894

Review 3.  Application of optimal design methodologies in clinical pharmacology experiments.

Authors:  Kayode Ogungbenro; Aristides Dokoumetzidis; Leon Aarons
Journal:  Pharm Stat       Date:  2009 Jul-Sep       Impact factor: 1.894

4.  The design of in vivo multifraction experiments to estimate the alpha-beta ratio.

Authors:  J M Taylor
Journal:  Radiat Res       Date:  1990-01       Impact factor: 2.841

5.  A novel global search algorithm for nonlinear mixed-effects models using particle swarm optimization.

Authors:  Seongho Kim; Lang Li
Journal:  J Pharmacokinet Pharmacodyn       Date:  2011-06-30       Impact factor: 2.745

6.  A generalisation of T-optimality for discriminating between competing models with an application to pharmacokinetic studies.

Authors:  Pavan Vajjah; Stephen B Duffull
Journal:  Pharm Stat       Date:  2012-10-12       Impact factor: 1.894

7.  Compound designs for dose-finding in the presence of nondesignable covariates.

Authors:  Atanu Biswas; Jesús López-Fidalgo
Journal:  Pharm Stat       Date:  2013-02-25       Impact factor: 1.894

8.  Optimal designs for population pharmacokinetic studies of the partner drugs co-administered with artemisinin derivatives in patients with uncomplicated falciparum malaria.

Authors:  Kris M Jamsen; Stephen B Duffull; Joel Tarning; Niklas Lindegardh; Nicholas J White; Julie A Simpson
Journal:  Malar J       Date:  2012-07-11       Impact factor: 2.979

9.  A new logistic dynamic particle swarm optimization algorithm based on random topology.

Authors:  Qingjian Ni; Jianming Deng
Journal:  ScientificWorldJournal       Date:  2013-05-30

10.  Optimal sampling designs for estimation of Plasmodium falciparum clearance rates in patients treated with artemisinin derivatives.

Authors:  Jennifer A Flegg; Philippe J Guérin; Francois Nosten; Elizabeth A Ashley; Aung Pyae Phyo; Arjen M Dondorp; Rick M Fairhurst; Duong Socheat; Steffen Borrmann; Anders Björkman; Andreas Mårtensson; Mayfong Mayxay; Paul N Newton; Delia Bethell; Youry Se; Harald Noedl; Mahamadou Diakite; Abdoulaye A Djimde; Tran T Hien; Nicholas J White; Kasia Stepniewska
Journal:  Malar J       Date:  2013-11-13       Impact factor: 2.979

  10 in total
  5 in total

1.  Standardized maximim D-optimal designs for enzyme kinetic inhibition models.

Authors:  Ping-Yang Chen; Ray-Bing Chen; Heng-Chin Tung; Weng Kee Wong
Journal:  Chemometr Intell Lab Syst       Date:  2017-09-06       Impact factor: 3.491

2.  Extended two-stage adaptive designs with three target responses for phase II clinical trials.

Authors:  Seongho Kim; Weng Kee Wong
Journal:  Stat Methods Med Res       Date:  2017-05-23       Impact factor: 3.021

3.  A Modified Particle Swarm Optimization Technique for Finding Optimal Designs for Mixture Models.

Authors:  Weng Kee Wong; Ray-Bing Chen; Chien-Chih Huang; Weichung Wang
Journal:  PLoS One       Date:  2015-06-19       Impact factor: 3.240

4.  Finding High-Dimensional D-Optimal Designs for Logistic Models via Differential Evolution.

Authors:  Weinan Xu; Weng Kee Wong; Kay Chen Tan; Jianxin Xu
Journal:  IEEE Access       Date:  2019-01-01       Impact factor: 3.367

Review 5.  Metaheuristics for pharmacometrics.

Authors:  Seongho Kim; Andrew C Hooker; Yu Shi; Grace Hyun J Kim; Weng Kee Wong
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2021-10-22
  5 in total

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