Literature DB >> 25284889

Quantitative Thermodynamic Analyses of Spectroscopic Titration Curves.

Wlodzimierz Bujalowski1, Maria J Jezewska2.   

Abstract

Elucidation of ligand - macromolecule interactions requires detailed knowledge of energetics of the formed complexes. Spectroscopic methods are most commonly used in characterizing molecular interactions in solution. The methods do not require large quantities of material and most importantly, do not perturb the studied reactions. However, spectroscopic methods absolutely require the determination of the relationship between the observed signal and the degree of binding in order to obtain meaningful interaction parameters. In other words, the meaningful, thermodynamic interaction parameters can be only determined if the relationship between the observed signal and the degree of binding is determined and not assumed, based on an ad hoc model of the relationship. The approaches discussed here allow an experimenter to quantitatively determine the degree of binding and the free ligand concentration, i.e., they enable to construct thermodynamic binding isotherms in a model-independent fashion.

Entities:  

Keywords:  Binding Isotherms; Fluorescence; Spectroscopic Titrations; Thermodynamics

Year:  2014        PMID: 25284889      PMCID: PMC4181404          DOI: 10.1016/j.molstruc.2014.04.041

Source DB:  PubMed          Journal:  J Mol Struct        ISSN: 0022-2860            Impact factor:   3.196


  48 in total

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4.  Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

Authors:  J D McGhee; P H von Hippel
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5.  A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions.

Authors:  I Wong; T M Lohman
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6.  Role of protein--protein interactions in the regulation of transcription by trp repressor investigated by fluorescence spectroscopy.

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8.  Interactions of Escherichia coli transcription termination factor rho with RNA. I. Binding stoichiometries and free energies.

Authors:  J A McSwiggen; D G Bear; P H von Hippel
Journal:  J Mol Biol       Date:  1988-02-20       Impact factor: 5.469

9.  Human DNA polymerase beta recognizes single-stranded DNA using two different binding modes.

Authors:  S Rajendran; M J Jezewska; W Bujalowski
Journal:  J Biol Chem       Date:  1998-11-20       Impact factor: 5.157

10.  Cooperative, excluded-site binding and its dynamics for the interaction of gene 5 protein with polynucleotides.

Authors:  D Pörschke; H Rauh
Journal:  Biochemistry       Date:  1983-09-27       Impact factor: 3.162

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