| Literature DB >> 25280484 |
Young Seok Park, Young Joo Jeon, Hyun Seok Kim, In Bo Han, Seung-Hun Oh, Dong-Seok Kim1, Nam Keun Kim.
Abstract
BACKGROUND: To investigate the association of single-nucleotide polymorphisms (SNPs) in matrix metalloproteinases (MMPs)-2, -3, and -9 and tissue inhibitor of metalloproteinase (TIMP)-2 with moyamoya disease (MMD). We conducted a case-control study of MMD patients by assessing the prevalence of six SNPs of MMP-2 -1575G > A [rs243866], MMP-2 -1306C > T [rs243865], MMP-3 -1171 5a/6a [rs3025058], MMP-9 -1562C > T [rs3918242], MMP-9 Q279R [rs17576], and TIMP-2 -418G > C [rs8179090].Entities:
Mesh:
Substances:
Year: 2014 PMID: 25280484 PMCID: PMC4196131 DOI: 10.1186/s12883-014-0180-5
Source DB: PubMed Journal: BMC Neurol ISSN: 1471-2377 Impact factor: 2.474
Demographic characteristics between controls and moyamoya patients
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| Number of subjects | ||||||
| <18 years | 102 (42.0) | 56 (52.3) | 54 (58.7) | 2 (13.3) | ||
| ≥18 years | 141 (58.0) | 51 (47.7) | 38 (41.3) | 13 (86.7) | ||
| Age (means ± SD) | ||||||
| <18 years | 7.71 ± 4.05 | 7.98 ± 4.13 | 0.92 | 8.11 ± 4.12 | 4.50 ± 3.54 | NA |
| ≥18 years | 36.72 ± 10.05 | 34.98 ± 11.29 | 0.25 | 34.63 ± 11.45 | 36.00 ± 11.21 | 0.69 |
| Sex [male, n(%)] | ||||||
| <18 years | 54 (52.9) | 22 (39.3) | 0.10 | 21 (38.9) | 1 (50.0) | 1.00† |
| ≥18 years | 51 (21.0) | 14 (27.5) | 0.26 | 12 (31.6) | 2 (15.4) | 0.47† |
| Collateral vessel formation score (n = 64) | ||||||
| 0 | - | 2 | ||||
| 1 | - | 22 | ||||
| 2 | - | 40 |
*P values were calculated using the Mann-Whitney test for continuous data and χ2-test for categorical data.
†Fisher’s exact test. NA; not applicable.
The genotype frequencies of polymorphisms between the control group and patients with moyamoya disease
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| GG | 210 (86.4) | 92 (86.0) | 1.00 (reference) | ||
| GA | 33 (13.6) | 15 (14.0) | 1.03 (0.53-2.00) | 0.94 | 0.94 |
| AA | 0 (0.0) | 0 (0.0) | NA | NA | |
| Dominant (GG vs. GA + AA) | 1.03 (0.53-2.00) | 0.94 | 0.94 | ||
| Recessive (GG + GA vs. AA) | NA | NA | |||
| HWE P | 0.256 | 0.436 | |||
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| CC | 222 (91.4) | 99 (92.5) | 1.00 (reference) | ||
| CT | 21 (8.6) | 8 (7.5) | 0.87 (0.37-2.05) | 0.75 | 0.75 |
| TT | 0 (0.0) | 0 (0.0) | NA | NA | |
| Dominant (CC vs. CT + TT) | 0.87 (0.37-2.05) | 0.75 | 0.75 | ||
| Recessive (CC + CT vs. TT) | NA | NA | |||
| HWE P | 0.481 | 0.688 | |||
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| 6a6a | 187 (77.0) | 78 (72.9) | 1.00 (reference) | ||
| 6a5a | 51 (21.0) | 23 (21.5) | 1.07 (0.61-1.89) | 0.81 | 0.81 |
| 5a5a | 5 (2.1) | 6 (5.6) | 2.92 (0.85-10.00) | 0.09 | 0.18 |
| Dominant (6a6a vs. 6a5a + 5a5a) | 1.24 (0.74-2.10) | 0.42 | 0.56 | ||
| Recessive (6a6a + 6a5a vs. 5a5a) | 3.00 (0.88-10.20) | 0.08 | 0.18 | ||
| HWE P | 0.493 | 0.027 | |||
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| CC | 195 (80.2) | 85 (79.4) | 1.000 (reference) | ||
| CT | 47 (19.3) | 19 (17.8) | 0.91 (0.50-1.66) | 0.76 | 0.92 |
| TT | 1 (0.4) | 3 (2.8) | 6.12 (0.62-60.42) | 0.12 | 0.24 |
| Dominant (CC vs. CT + TT) | 1.03 (0.58-1.83) | 0.92 | 0.92 | ||
| Recessive (CC + CT vs. TT) | 6.45 (0.65-63.68) | 0.11 | 0.24 | ||
| HWE P | 0.298 | 0.149 | |||
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| GG | 100 (41.2) | 56 (52.3) | 1.000 (reference) | ||
| GA | 120 (49.4) | 46 (43.0) | 0.66 (0.41-1.07) | 0.09 | 0.11 |
| AA | 23 (9.5) | 5 (4.7) | 0.36 (0.13-1.00) | 0.05 | 0.10 |
| Dominant (GG vs. GA + AA) | 0.61 (0.39-0.98) | 0.04 | 0.10 | ||
| Recessive (GG + GA vs. AA) | 0.45 (0.16-1.22) | 0.11 | 0.11 | ||
| HWE P | 0.127 | 0.244 | |||
Adjusted by age and gender. NA; Not applicable.
a P value obtained by Fisher’s exact test.
bFalse positive discovery rate-adjusted P value.
The genotype frequencies of polymorphisms according to age of participants
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| GG | 88 (86.3) | 46 (82.1) | 1.00 (reference) | 122 (86.5) | 46 (90.2) | 1.00 (reference) | ||||
| GA | 14 (13.7) | 10 (17.9) | 1.32 (0.54-3.23) | 0.55 | 0.55 | 19 (13.5) | 5 (9.8) | 0.73 (0.26-2.08) | 0.56 | 0.56 |
| AA | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| Dominant (GG vs. GA + AA) | 1.32 (0.54-3.23) | 0.55 | 0.55 | 0.73 (0.26-2.08) | 0.56 | 0.56 | ||||
| Recessive (GG + GA vs. AA) | NA | NA | NA | NA | ||||||
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| CC | 90 (88.2) | 53 (94.6) | 1.00 (reference) | 132 (93.6) | 46 (90.2) | 1.00 (reference) | ||||
| CT | 12 (11.8) | 3 (5.4) | 0.44 (0.12-1.65) | 0.22 | 0.22 | 9 (6.4) | 5 (9.8) | 1.63 (0.51-5.17) | 0.41 | 0.41 |
| TT | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| Dominant (CC vs. CT + TT) | 0.44 (0.12-1.65) | 0.22 | 0.22 | 1.63 (0.51-5.17) | 0.41 | 0.41 | ||||
| Recessive (CC + CT vs. TT) | NA | NA | NA | NA | ||||||
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| 6a6a | 76 (74.5) | 43 (76.8) | 1.000 (reference) | 111 (78.7) | 35 (68.6) | 1.00 (reference) | ||||
| 6a5a | 24 (23.5) | 10 (17.9) | 0.73 (0.32-1.69) | 0.46 | 0.61 | 27 (19.1) | 13 (25.5) | 1.52 (0.71-3.27) | 0.28 | 0.28 |
| 5a5a | 2 (2.0) | 3 (5.4) | 3.03 (0.47-19.31) | 0.24 | 0.48 | 3 (2.1) | 3 (5.9) | 3.17 (0.61-16.45) | 0.17 | 0.28 |
| Dominant (6a6a vs. 6a5a + 5a5a) | 0.90 (0.42-1.95) | 0.80 | 0.80 | 1.69 (0.82-3.46) | 0.15 | 0.28 | ||||
| Recessive (6a6a + 6a5a vs. 5a5a) | 3.55 (0.56-22.60) | 0.18 | 0.48 | 2.89 (0.56-14.94) | 0.21 | 0.28 | ||||
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| CC | 79 (77.5) | 45 (80.4) | 1.00 (reference) | 116 (82.3) | 40 (78.4) | 1.00 (reference) | ||||
| CT | 22 (21.6) | 9 (16.1) | 0.62 (0.257-1.493) | 0.29 | 0.39 | 25 (17.7) | 10 (19.6) | 1.22 (0.54-2.79) | 0.63 | 0.63 |
| TT | 1 (1.0) | 2 (3.6) | 3.79 (0.33-43.80) | 0.29 | 0.39 | 0 (0.0) | 1 (2.0) | NA | NA | |
| Dominant (CC vs. CT + TT) | 0.75 (0.33-1.71) | 0.49 | 0.49 | 1.34 (0.60-3.00) | 0.47 | 0.63 | ||||
| Recessive (CC + CT vs. TT) | 4.24 (0.37-48.86) | 0.25 | 0.39 | NA | NA | |||||
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| GG | 41 (40.2) | 29 (51.8) | 1.000 (reference) | 59 (41.8) | 27 (52.9) | 1.00 (reference) | ||||
| GA | 52 (51.0) | 25 (44.6) | 0.70 (0.35-1.38) | 0.30 | 0.30 | 68 (48.2) | 21 (41.2) | 0.65 (0.33-1.29) | 0.22 | 0.29 |
| AA | 9 (8.8) | 2 (3.6) | 0.25 (0.05-1.29) | 0.10 | 0.30 | 14 (9.9) | 3 (5.9) | 0.41 (0.10-1.60) | 0.20 | 0.29 |
| Dominant (GG vs. GA + AA) | 0.63 (0.32-1.24) | 0.19 | 0.30 | 0.62 (0.32-1.18) | 0.15 | 0.29 | ||||
| Recessive (GG + GA vs. AA) | 0.38 (0.08-1.83) | 0.23 | 0.30 | 0.52 (0.14-1.92) | 0.33 | 0.33 | ||||
Adjusted by age and gender. NA; Not applicable.
a P value obtained by Fisher’s exact test.
bFalse positive discovery rate-adjusted P value.
The combined genotype frequencies of polymorphisms according to age of participants
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| GG/CC | 88 (86.3) | 46 (82.1) | 1.00 (reference) | 122 (86.5) | 46 (90.2) | 1.00 (reference) | ||||
| GG/CT | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| GG/TT | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| GA/CC | 2 (2.0) | 7 (12.5) | 6.70 (1.34-33.60) | 0.01 | 0.02 | 10 (7.1) | 0 (0.0) | 0.13 (0.01-2.19) | 0.07 | 0.14 |
| GA/CT | 12 (11.8) | 3 (5.4) | 0.48 (0.13-1.78) | 0.39 | 0.39 | 9 (6.4) | 5 (9.8) | 1.47 (0.47-4.63) | 0.54 | 0.54 |
| GA/TT | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| AA/CC | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| AA/CT | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| AA/TT | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
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| CC/GG | 25 (24.8) | 22 (39.3) | 1.00 (reference) | 45 (31.9) | 19 (37.3) | 1.00 (reference) | ||||
| CC/GA | 45 (44.1) | 21 (37.5) | 0.53 (0.24-1.16) | 0.11 | 0.28 | 57 (40.4) | 18 (35.3) | 0.72 (0.34-1.55) | 0.40 | 0.62 |
| CC/AA | 9 (8.8) | 2 (3.6) | 0.24 (0.05-1.25) | 0.09 | 0.28 | 14 (9.9) | 3 (5.9) | 0.44 (0.11-1.76) | 0.25 | 0.62 |
| CT/GG | 15 (14.7) | 5 (8.9) | 0.50 (0.15-1.71) | 0.27 | 0.44 | 14 (9.9) | 7 (13.7) | 1.32 (0.45-3.91) | 0.62 | 0.62 |
| CT/GA | 7 (6.9) | 4 (7.1) | 0.59 (0.14-2.43) | 0.46 | 0.46 | 11 (7.8) | 3 (5.9) | 0.66 (0.16-2.66) | 0.56 | 0.62 |
| CT/AA | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| TT/GG | 1 (1.0) | 2 (3.6) | 3.73 (0.24-58.01) | 0.35 | 0.44 | 0 (0.0) | 1 (2.0) | NA | NA | |
| TT/GA | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
| TT/AA | 0 (0.0) | 0 (0.0) | NA | NA | 0 (0.0) | 0 (0.0) | NA | NA | ||
Adjusted by age and gender. NA; Not applicable.
a P value obtained by Fisher’s exact test.
bFalse positive discovery rate-adjusted P value.
The genotype frequencies of -418G > C polymorphism between the control group and patients with moyamoya disease
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| GG | 178 (73.3) | 56 (52.3) | 1.00 (reference) | ||
| GC | 61 (25.1) | 46 (43.0) | 2.33 (1.42-3.80) | <.01 | 0.02 |
| CC | 4 (1.6) | 5 (4.7) | 3.53 (0.89-13.98) | 0.07 | 0.09 |
| Dominant (GG vs. GC + CC) | 2.39 (1.48-3.85) | <.01 | 0.02 | ||
| Recessive (GG + GC vs. CC) | 2.32 (0.60-8.96) | 0.23 | 0.23 | ||
| HWE P | 0.64 | 0.24 |
Adjusted by age and gender. NA; Not applicable.
a P value obtained by Fisher’s exact test.
bFalse positive discovery rate-adjusted P value.
The genotype frequencies of -418G > C polymorphism according to age of participants
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| GG | 66 (64.7) | 29 (51.8) | 1.00 (reference) | 110 (78.0) | 27 (52.9) | 1.00 (reference) | ||||
| GC | 31 (30.4) | 23 (41.1) | 1.69 (0.84-3.42) | 0.14 | 0.28 | 31 (22.0) | 23 (45.1) | 2.99 (1.49-5.98) | <.01 | 0.01 |
| CC | 5 (4.9) | 4 (7.1) | 1.91 (0.47-7.75) | 0.37 | 0.49 | 0 | 1 (2.0) | NA | NA | |
| Dominant | 1.69 (0.86-3.29) | 0.13 | 0.28 | 3.10 (1.56-6.18) | <.01 | 0.01 | ||||
| Recessive | 1.36 (0.34-5.38) | 0.67 | 0.67 | NA | NA | |||||
Adjusted by age and gender. NA; Not applicable.
a P value obtained by Fisher’s exact test.
bFalse positive discovery rate-adjusted P value.