Literature DB >> 25279928

Another explanation for apparent epistasis.

Andrew R Wood1, Marcus A Tuke1, Mike A Nalls2, Dena G Hernandez3, Stefania Bandinelli4, Andrew B Singleton2, David Melzer1, Luigi Ferrucci5, Timothy M Frayling1, Michael N Weedon1.   

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Year:  2014        PMID： 25279928      PMCID： PMC6478385          DOI： 10.1038/nature13691

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  8 in total

1.  Haploview: analysis and visualization of LD and haplotype maps.

Authors:  J C Barrett; B Fry; J Maller; M J Daly
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

2.  Effect of two- and three-locus linkage disequilibrium on the power to detect marker/phenotype associations.

Authors:  Dahlia M Nielsen; Margaret G Ehm; Dmitri V Zaykin; Bruce S Weir
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

3.  Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies.

Authors:  Brian L Browning; Zhaoxia Yu
Journal:  Am J Hum Genet       Date:  2009-12       Impact factor: 11.025

4.  EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards.

Authors:  Gibran Hemani; Athanasios Theocharidis; Wenhua Wei; Chris Haley
Journal:  Bioinformatics       Date:  2011-04-06       Impact factor: 6.937

5.  MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.

Authors:  Yun Li; Cristen J Willer; Jun Ding; Paul Scheet; Gonçalo R Abecasis
Journal:  Genet Epidemiol       Date:  2010-12       Impact factor: 2.135

6.  A framework for variation discovery and genotyping using next-generation DNA sequencing data.

Authors:  Mark A DePristo; Eric Banks; Ryan Poplin; Kiran V Garimella; Jared R Maguire; Christopher Hartl; Anthony A Philippakis; Guillermo del Angel; Manuel A Rivas; Matt Hanna; Aaron McKenna; Tim J Fennell; Andrew M Kernytsky; Andrey Y Sivachenko; Kristian Cibulskis; Stacey B Gabriel; David Altshuler; Mark J Daly
Journal:  Nat Genet       Date:  2011-04-10       Impact factor: 38.330

7.  Allelic heterogeneity and more detailed analyses of known loci explain additional phenotypic variation and reveal complex patterns of association.

Authors:  Andrew R Wood; Dena G Hernandez; Michael A Nalls; Hanieh Yaghootkar; J Raphael Gibbs; Lorna W Harries; Sean Chong; Matthew Moore; Michael N Weedon; Jack M Guralnik; Stefania Bandinelli; Anna Murray; Luigi Ferrucci; Andrew B Singleton; David Melzer; Timothy M Frayling
Journal:  Hum Mol Genet       Date:  2011-07-28       Impact factor: 6.150

8.  Detection and replication of epistasis influencing transcription in humans.

Authors:  Gibran Hemani; Konstantin Shakhbazov; Harm-Jan Westra; Tonu Esko; Anjali K Henders; Allan F McRae; Jian Yang; Greg Gibson; Nicholas G Martin; Andres Metspalu; Lude Franke; Grant W Montgomery; Peter M Visscher; Joseph E Powell
Journal:  Nature       Date:  2014-02-26       Impact factor: 49.962
  8 in total
  49 in total

1.  An Efficient Genome-Wide Multilocus Epistasis Search.

Authors:  Hanni P Kärkkäinen; Zitong Li; Mikko J Sillanpää
Journal:  Genetics       Date:  2015-09-23       Impact factor: 4.562

Review 2.  The role of regulatory variation in complex traits and disease.

Authors:  Frank W Albert; Leonid Kruglyak
Journal:  Nat Rev Genet       Date:  2015-02-24       Impact factor: 53.242

3.  Widespread Allelic Heterogeneity in Complex Traits.

Authors:  Farhad Hormozdiari; Anthony Zhu; Gleb Kichaev; Chelsea J-T Ju; Ayellet V Segrè; Jong Wha J Joo; Hyejung Won; Sriram Sankararaman; Bogdan Pasaniuc; Sagiv Shifman; Eleazar Eskin
Journal:  Am J Hum Genet       Date:  2017-05-04       Impact factor: 11.025

4.  Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action.

Authors:  Ence Yang; Gang Wang; Jizhou Yang; Beiyan Zhou; Yanan Tian; James J Cai
Journal:  Hum Mol Genet       Date:  2016-11-15       Impact factor: 6.150

5.  Significance Testing for Allelic Heterogeneity.

Authors:  Yangqing Deng; Wei Pan
Journal:  Genetics       Date:  2018-06-29       Impact factor: 4.562

6.  Confronting the missing epistasis problem: on the reproducibility of gene-gene interactions.

Authors:  William Murk; Michael B Bracken; Andrew T DeWan
Journal:  Hum Genet       Date:  2015-05-22       Impact factor: 4.132

7.  Homeologous Epistasis in Wheat: The Search for an Immortal Hybrid.

Authors:  Nicholas Santantonio; Jean-Luc Jannink; Mark Sorrells
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

8.  Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues.

Authors:  Xuanyao Liu; Hilary K Finucane; Alexander Gusev; Gaurav Bhatia; Steven Gazal; Luke O'Connor; Brendan Bulik-Sullivan; Fred A Wright; Patrick F Sullivan; Benjamin M Neale; Alkes L Price
Journal:  Am J Hum Genet       Date:  2017-03-23       Impact factor: 11.025

Review 9.  Genotypic Context and Epistasis in Individuals and Populations.

Authors:  Timothy B Sackton; Daniel L Hartl
Journal:  Cell       Date:  2016-07-14       Impact factor: 41.582

10.  Scalable Nonparametric Prescreening Method for Searching Higher-Order Genetic Interactions Underlying Quantitative Traits.

Authors:  Juho A J Kontio; Mikko J Sillanpää
Journal:  Genetics       Date:  2019-10-04       Impact factor: 4.562
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