| Literature DB >> 25268258 |
T Liu1, S-C Li2, G Papenberg3, J Schröder4, J T Roehr5, W Nietfeld5, U Lindenberger6, L Bertram7.
Abstract
Polymorphisms in the gene encoding catenin-β-like 1 (CTNNBL1) were recently reported to be associated with verbal episodic memory performance--in particular, delayed verbal free recall assessed between 5 and 30 min after encoding--in a genome-wide association study on healthy young adults. To further examine the genetic effects of CTNNBL1, we tested for association between 455 single-nucleotide polymorphisms (SNPs) in or near CTNNBL1 and 14 measures of episodic memory performance from three different tasks in 1743 individuals. Probands were part of a population-based study of mentally healthy adult men and women, who were between 20 and 70 years old and were recruited as participants for the Berlin Aging Study II. Associations were assessed using linear regression analysis. Despite having sufficient power to detect the previously reported effect sizes, we found no evidence for statistically significant associations between the tested CTNNBL1 SNPs and any of the 14 measures of episodic memory. The previously reported effects of genetic polymorphisms in CTNNBL1 on episodic memory performance do not generalize to the broad range of tasks assessed in our cohort. If not altogether spurious, the effects may be limited to a very narrow phenotypic domain (that is, verbal delayed free recall between 5 and 30 min). More studies are needed to further clarify the role of CTNNBL1 in human memory.Entities:
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Year: 2014 PMID: 25268258 PMCID: PMC4203019 DOI: 10.1038/tp.2014.93
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 6.222
Association results for rs16986890 with episodic memory performance measures in the BASE-II cohort
| P | P | ||||||
|---|---|---|---|---|---|---|---|
| SRFOBK (young) | 0.6063 | 0.5927 | 0.7691 | 0.4984 | 1 | −0.0983 | 0.1452 |
| SRFOBK (old) | 0.4643 | 0.4519 | 0.4483 | 0.0605 | 0.6655 | −0.1592 | 0.0848 |
| SRFO (young) | 0.6033 | 0.5874 | 0.7896 | 0.4897 | 1 | −0.1002 | 0.1450 |
| SRFO (old) | 0.4654 | 0.4536 | 0.4618 | 0.0761 | 0.8371 | −0.1500 | 0.08453 |
| SRFO_P1 (young) | 0.8323 | 0.8557 | 0.9200 | 0.5249 | 1 | 0.0937 | 0.1474 |
| SRFO_P1 (old) | 0.6020 | 0.5928 | 0.5400 | 0.7670 | 1 | −0.0253 | 0.08557 |
| SRFO_P2 (young) | 0.5691 | 0.5250 | 1.0000 | 0.3241 | 1 | −0.1422 | 0.1441 |
| SRFO_P2 (old) | 0.2144 | 0.1859 | 0.1250 | 0.1437 | 1 | −0.1231 | 0.08424 |
| SRFO_P3 (young) | 0.5622 | 0.5311 | 1.0000 | 0.7540 | 1 | −0.0460 | 0.1467 |
| SRFO_P3 (old) | 0.2749 | 0.2420 | 0.3300 | 0.0756 | 0.8316 | −0.1513 | 0.08513 |
| SRBK (young) | 0.5958 | 0.5861 | 0.7140 | 0.5893 | 1 | −0.0789 | 0.1460 |
| SRBK (old) | 0.4676 | 0.4566 | 0.4417 | 0.1229 | 1 | −0.1322 | 0.08572 |
| SRBK_P1 (young) | 0.7007 | 0.6848 | 1.0000 | 0.8337 | 1 | −0.0307 | 0.1463 |
| SRBK_P1 (old) | 0.3773 | 0.3367 | 0.2500 | 0.0713 | 0.7843 | −0.1566 | 0.08686 |
| SRBK_P2 (young) | 0.6483 | 0.6111 | 1.0000 | 0.4527 | 1 | −0.1101 | 0.1466 |
| SRBK_P2 (old) | 0.2649 | 0.2440 | 0.2500 | 0.4167 | 1 | −0.0693 | 0.08544 |
| SRBK_P3 (young) | 0.7922 | 0.7783 | 0.9200 | 0.7465 | 1 | −0.0477 | 0.1475 |
| SRBK_P3 (old) | 0.6433 | 0.6136 | 0.6650 | 0.0559 | 0.6149 | −0.1625 | 0.08471 |
| Delay_2.5 h (young) | 0.6928 | 0.6987 | 0.9200 | 0.9458 | 1 | 0.0099 | 0.1453 |
| Delay_2.5 h (old) | 0.6275 | 0.6393 | 0.5800 | 0.5163 | 1 | 0.0556 | 0.0886 |
| Delay_1 week (young) | 0.4563 | 0.4951 | 0.2400 | 0.4998 | 1 | 0.0982 | 0.1455 |
| Delay_1 week (old) | 0.2905 | 0.2544 | 0.2100 | 0.0061 | 0.0671 | −0.2317 | 0.08444 |
| Item–item (young) | 0.6142 | 0.6385 | 1.0000 | 0.4917 | 1 | 0.0974 | 0.1416 |
| Item–item (old) | 0.5175 | 0.5234 | 0.6350 | 0.3906 | 1 | 0.0723 | 0.08412 |
| Item–pair (young) | 0.3555 | 0.2947 | 0.8700 | 0.2817 | 1 | −0.1576 | 0.1463 |
| Item–pair (old) | 0.1709 | 0.2070 | 0.1800 | 0.1322 | 1 | 0.1288 | 0.08585 |
| Pair–pair (young) | 0.6349 | 0.5411 | 0.9300 | 0.0775 | 0.8525 | −0.2570 | 0.1453 |
| Pair–pair (old) | 0.3998 | 0.3822 | 0.4850 | 0.6579 | 1 | −0.0369 | 0.08321 |
| PC1 (young) | −3.0145 | −2.6460 | −7.3921 | 0.4336 | 1 | 0.3117 | 0.3980 |
| PC1 (old) | 0.9629 | 1.2765 | 1.2932 | 0.0867 | 0.2601 | 0.2818 | 0.1644 |
| PC2 (young) | 0.03176 | 0.2000 | 0.1757 | 0.7019 | 1 | 0.0584 | 0.1526 |
| PC2 (old) | −0.02567 | 0.06954 | −0.07147 | 0.3976 | 1 | 0.0789 | 0.09339 |
| PC3 (young) | −0.2131 | −0.4852 | 1.4498 | 0.3237 | 0.9711 | −0.1601 | 0.1621 |
| PC3 (old) | 0.05758 | 0.26661 | 0.8522 | 0.0213 | 0.0639 | 0.2054 | 0.08938 |
Abbreviations: BASE-II, Berlin Aging Study II; P1, P2 and P3 are the first, second and third portion of the recall paradigms; P-adjusted, P-value after adjusting for multiple comparisons (see methods); P-raw, nominal P-value of association statistic; SRFOBK, combined accuracy of forward and backward serial recall tests; SRFO, accuracy of forward serial recall test; SRBK, accuracy of backward serial recall test.
For more detailed descriptions of the tasks and traits, please see Supplementary Methods and Supplementary Table 1. For more details on the administration of these tests, see studies by Lewandowsky et al.,[3] Li et al.[17] and Papenberg et al.[6] Phenotypic means of genotypes AA (1128–1173 old/373–377 young), AG (137–142 old/45–47 young) and GG (4 old/1 young) are shown in columns 2, 3 and 4, respectively.
Association results for the most significant of 455 SNPs in CTNNBL1 with episodic memory performance measures in the BASE-II cohort
| P | P | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| SRFOBK (young) | rs913966 | 36309922 | G | C | 0.06179 | 0.05215 | 1 | −0.2877 | 0.1476 |
| SRFOBK (old) | rs6095709 | 36305770 | G | A | 0.07161 | 0.00556 | 1 | −0.2320 | 0.08374 |
| SRFO (young) | rs6063608 | 36430407 | G | A | 0.2170 | 0.07103 | 1 | −0.1430 | 0.07904 |
| SRFO (old) | rs6095709 | 36305770 | G | A | 0.07189 | 0.00992 | 1 | −0.2148 | 0.08332 |
| SRFO_P1 (young) | rs1123291 | 36529854 | G | A | 0.06437 | 0.02447 | 1 | 0.3400 | 0.1504 |
| SRFO_P1 (old) | rs198490 | 36273719 | C | T | 0.4420 | 0.07607 | 1 | −0.07010 | 0.03948 |
| SRFO_P2 (young) | rs6091461 | 36530906 | A | G | 0.2691 | 0.04901 | 1 | −0.1571 | 0.07968 |
| SRFO_P2 (old) | rs62201719 | 36517381 | A | G | 0.4643 | 0.0220 | 1 | 0.08988 | 0.03922 |
| SRFO_P3 (young) | rs913966 | 36309922 | G | C | 0.06179 | 0.04872 | 1 | −0.2934 | 0.1483 |
| SRFO_P3 (old) | rs6095709 | 36305770 | G | A | 0.07161 | 0.01647 | 1 | −0.2021 | 0.08441 |
| SRBK (young) | rs913966 | 36309922 | G | C | 0.06179 | 0.03835 | 1 | −0.3092 | 0.1486 |
| SRBK (old) | chr20:36488508:D | 36488508 | TCTCA | T | 0.2581 | 0.01418 | 1 | 0.1111 | 0.04525 |
| SRBK_P1 (young) | rs11698255 | 36531400 | G | A | 0.07086 | 0.01179 | 1 | 0.3643 | 0.1438 |
| SRBK_P1 (old) | rs2144768 | 36501221 | G | A | 0.2809 | 0.00200 | 1 | 0.1437 | 0.04640 |
| SRBK_P2 (young) | rs913966 | 36309922 | G | C | 0.06179 | 0.11507 | 1 | −0.2382 | 0.1511 |
| SRBK_P2 (old) | rs73290822 | 36325944 | C | T | 0.05222 | 0.05189 | 1 | 0.1739 | 0.08966 |
| SRBK_P3 (young) | rs913966 | 36309922 | G | C | 0.06179 | 0.02859 | 1 | −0.31934 | 0.1453 |
| SRBK_P3 (old) | rs75642402 | 36423858 | T | C | 0.06549 | 0.00502 | 1 | −0.24575 | 0.0880 |
| Delay_2.5 h (young) | rs1535184 | 36525522 | T | C | 0.2024 | 0.02358 | 1 | −0.20769 | 0.09165 |
| Delay_2.5 h (old) | rs1535183 | 36525517 | A | G | 0.2951 | 0.00853 | 1 | 0.1201 | 0.04565 |
| Delay_1 week (young) | rs73290839 | 36356451 | A | G | 0.06818 | 0.03357 | 1 | 0.3082 | 0.1444 |
| Delay_1 week (old) | rs59989754 | 36400997 | G | A | 0.05085 | 0.00097 | 0.64 | −0.3040 | 0.09191 |
| Item–item (young) | rs73290827 | 36335697 | T | G | 0.06673 | 0.00169 | 1 | −0.4443 | 0.1381 |
| Item–item (old) | rs112689619 | 36278748 | T | C | 0.05559 | 0.03147 | 1 | 0.1907 | 0.08881 |
| Item–pair (young) | rs75642402 | 36423858 | T | C | 0.06789 | 0.04421 | 1 | −0.3036 | 0.1512 |
| Item–pair (old) | rs6126493 | 36532374 | C | T | 0.4285 | 0.00503 | 1 | −0.1174 | 0.04184 |
| Pair–pair (young) | rs62201726 | 36543271 | G | A | 0.1004 | 0.00186 | 1 | −0.3684 | 0.1187 |
| Pair–pair (old) | chr20:36283430:D | 36283430 | TG | T | 0.1947 | 0.15125 | 1 | −0.07110 | 0.04972 |
| PC1 (young) | rs913966 | 36309922 | G | C | 0.06048 | 0.044565 | 1 | 0.8207 | 0.4070 |
| PC1 (old) | rs73290822 | 36325944 | C | T | 0.05165 | 0.015473 | 1 | −0.4290 | 0.1770 |
| PC2 (young) | rs913966 | 36309922 | G | C | 0.06048 | 0.01624 | 1 | 0.3811 | 0.1578 |
| PC2 (old) | rs1535183 | 36525517 | A | G | 0.2937 | 0.009717 | 1 | 0.1296 | 0.05010 |
| PC3 (young) | rs66999026 | 36414507 | G | A | 0.06705 | 0.004033 | 0.7259 | −0.4666 | 0.1597 |
| PC (old) | rs6096781 | 36527215 | T | C | 0.05276 | 0.002951 | 0.5312 | 0.2767 | 0.09290 |
Abbreviations: A1, allele 1; A2, allele 2; BASE-II, Berlin Aging Study II; MAF, minor allele frequencies in the respective cohort (that is, ‘old' or ‘young'); P1, P2 and P3 are the first, second and third portion of the recall paradigms; P-adjusted, P-value after adjusting for multiple comparisons (see methods); P-raw, nominal P-value of association statistic; SRFOBK, combined accuracy of forward and backward serial recall tests; SRFO, accuracy of forward serial recall test; SRBK, accuracy of backward serial recall test.
For more detailed descriptions of the tasks and traits, please see Supplementary Methods and Supplementary Table 1. For more details on the administration of these tests, see studies by Lewandowsky et al.,[3] Li et al.[17] and Papenberg et al.[6] Phenotypic means of genotypes AA (1128–1173 old/373–377 young), AG (137–142 old/45–47 young) and GG (4 old/1 young) are shown in columns 2, 3 and 4, respectively. Position is the SNP location on chromosome 20 based on hg19.
Figure 1Local view of association signals in the chromosomal region around CTNNBL1 using the delayed image recognition paradigm. (a) Results from association analyses of 455 SNPs in the CTNNBL1 region and episodic memeory performance of the ‘old' (between 60 and 70 years old) subgroup of BASE-II participants. (b) Results from association analyses of 455 SNPs in the CTNNBL1 region and episodic memory performance of the 'young' (between 20 and 30 years old) subgroup of BASE-II participants. In both plots, SNPs are plotted by chromosomal position against association with ‘delay_1_week' (−log10 P). The index SNP rs16986890 is denoted by a green diamond and the location of gene CTNNBL1 is highlighted in gray color below the plots. SNPs are colored to reflect linkage disequilibrium with rs16986890 (using the CEU 1000 Genomes Project for European panel from HapMap Phase II). Images were generated using LocusZoom (http://csg.sph.umich.edu/locuszoom/). BASE-II, Berlin Aging Study II; SNP, single-nucleotide polymorphism.