Literature DB >> 25252105

Uracil-DNA glycosylases-structural and functional perspectives on an essential family of DNA repair enzymes.

N Schormann1, R Ricciardi, D Chattopadhyay.   

Abstract

Uracil-DNA glycosylases (UDGs) are evolutionarily conserved DNA repair enzymes that initiate the base excision repair pathway and remove uracil from DNA. The UDG superfamily is classified into six families based on their substrate specificity. This review focuses on the family I enzymes since these are the most extensively studied members of the superfamily. The structural basis for substrate specificity and base recognition as well as for DNA binding, nucleotide flipping and catalytic mechanism is discussed in detail. Other topics include the mechanism of lesion search and molecular mimicry through interaction with uracil-DNA glycosylase inhibitors. The latest studies and findings detailing structure and function in the UDG superfamily are presented.
© 2014 The Protein Society.

Entities:  

Keywords:  DNA mimicry; DNA repair; base excision repair; uracil-DNA glycosylase

Mesh:

Substances:

Year:  2014        PMID: 25252105      PMCID: PMC4253808          DOI: 10.1002/pro.2554

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  78 in total

Review 1.  The enigmatic thymine DNA glycosylase.

Authors:  Daniel Cortázar; Christophe Kunz; Yusuke Saito; Roland Steinacher; Primo Schär
Journal:  DNA Repair (Amst)       Date:  2006-11-20

2.  A uracil-DNA glycosylase inhibitor encoded by a non-uracil containing viral DNA.

Authors:  Gemma Serrano-Heras; Margarita Salas; Alicia Bravo
Journal:  J Biol Chem       Date:  2006-01-18       Impact factor: 5.157

3.  Characterization of the uracil-DNA glycosylase activity of Epstein-Barr virus BKRF3 and its role in lytic viral DNA replication.

Authors:  Chih-Chung Lu; Ho-Ting Huang; Jiin-Tarng Wang; Geir Slupphaug; Tsai-Kun Li; Meng-Chuan Wu; Yi-Chun Chen; Chung-Pei Lee; Mei-Ru Chen
Journal:  J Virol       Date:  2006-11-15       Impact factor: 5.103

4.  Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.

Authors:  Hiromichi Kosaka; Jun Hoseki; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Journal:  J Mol Biol       Date:  2007-08-21       Impact factor: 5.469

5.  Correlated cleavage of single- and double-stranded substrates by uracil-DNA glycosylase.

Authors:  Viktoriya S Sidorenko; Grigory V Mechetin; Georgy A Nevinsky; Dmitry O Zharkov
Journal:  FEBS Lett       Date:  2008-01-15       Impact factor: 4.124

6.  Characterization of human cytomegalovirus uracil DNA glycosylase (UL114) and its interaction with polymerase processivity factor (UL44).

Authors:  Toril Ranneberg-Nilsen; Hege Avsnes Dale; Luisa Luna; Ragnhild Slettebakk; Ottar Sundheim; Halvor Rollag; Magnar Bjørås
Journal:  J Mol Biol       Date:  2008-05-17       Impact factor: 5.469

7.  Substrate specificity of homogeneous monkeypox virus uracil-DNA glycosylase.

Authors:  Sophie Duraffour; Alexander A Ishchenko; Murat Saparbaev; Jean-Marc Crance; Daniel Garin
Journal:  Biochemistry       Date:  2007-10-02       Impact factor: 3.162

8.  Enzymatic capture of an extrahelical thymine in the search for uracil in DNA.

Authors:  Jared B Parker; Mario A Bianchet; Daniel J Krosky; Joshua I Friedman; L Mario Amzel; James T Stivers
Journal:  Nature       Date:  2007-08-19       Impact factor: 49.962

9.  Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly.

Authors:  Norbert Schormann; Alexei Grigorian; Alexandra Samal; Raman Krishnan; Lawrence DeLucas; Debasish Chattopadhyay
Journal:  BMC Struct Biol       Date:  2007-07-02

10.  Protein p56 from the Bacillus subtilis phage phi29 inhibits DNA-binding ability of uracil-DNA glycosylase.

Authors:  Gemma Serrano-Heras; José A Ruiz-Masó; Gloria del Solar; Manuel Espinosa; Alicia Bravo; Margarita Salas
Journal:  Nucleic Acids Res       Date:  2007-08-13       Impact factor: 16.971

View more
  57 in total

1.  Crystal Structure of the Vaccinia Virus Uracil-DNA Glycosylase in Complex with DNA.

Authors:  Wim P Burmeister; Nicolas Tarbouriech; Pascal Fender; Céline Contesto-Richefeu; Christophe N Peyrefitte; Frédéric Iseni
Journal:  J Biol Chem       Date:  2015-06-04       Impact factor: 5.157

Review 2.  Applying gene editing to tailor precise genetic modifications in plants.

Authors:  Joyce Van Eck
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

3.  Replicating methicillin resistance?

Authors:  Joshua P Ramsay
Journal:  Nat Struct Mol Biol       Date:  2016-10-05       Impact factor: 15.369

4.  Non-reproducible sequence artifacts in FFPE tissue: an experience report.

Authors:  Richard Ofner; Cathrin Ritter; Selma Ugurel; Lorenzo Cerroni; Mathias Stiller; Thomas Bogenrieder; Flavio Solca; David Schrama; Jürgen C Becker
Journal:  J Cancer Res Clin Oncol       Date:  2017-03-17       Impact factor: 4.553

Review 5.  Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.

Authors:  Norbert Schormann; Natalia Zhukovskaya; Gregory Bedwell; Manunya Nuth; Richard Gillilan; Peter E Prevelige; Robert P Ricciardi; Surajit Banerjee; Debasish Chattopadhyay
Journal:  Protein Sci       Date:  2016-11-02       Impact factor: 6.725

Review 6.  Base Excision Repair in the Mitochondria.

Authors:  Aishwarya Prakash; Sylvie Doublié
Journal:  J Cell Biochem       Date:  2015-08       Impact factor: 4.429

7.  Glycogen Synthase Kinase 3 (GSK-3)-mediated Phosphorylation of Uracil N-Glycosylase 2 (UNG2) Facilitates the Repair of Floxuridine-induced DNA Lesions and Promotes Cell Survival.

Authors:  Carly A Baehr; Catherine J Huntoon; Song-My Hoang; Calvin R Jerde; Larry M Karnitz
Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

Review 8.  Targeting nuclear thymidylate biosynthesis.

Authors:  James Chon; Patrick J Stover; Martha S Field
Journal:  Mol Aspects Med       Date:  2016-11-19

9.  How does inflammation drive mutagenesis in colorectal cancer?

Authors:  Chia Wei Hsu; Mark L Sowers; Willie Hsu; Eduardo Eyzaguirre; Suimin Qiu; Celia Chao; Charles P Mouton; Yuri Fofanov; Pomila Singh; Lawrence C Sowers
Journal:  Trends Cancer Res       Date:  2017

10.  Base-flipping dynamics from an intrahelical to an extrahelical state exerted by thymine DNA glycosylase during DNA repair process.

Authors:  Lin-Tai Da; Jin Yu
Journal:  Nucleic Acids Res       Date:  2018-06-20       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.