Literature DB >> 25249876

Bis{2-meth-oxy-6-[(E)-(4-methyl-benz-yl)imino-meth-yl]phenolato}palladium(II) chloro-form monosolvate.

Hadariah Bahron1, Amalina Mohd Tajuddin2, Wan Nazihah Wan Ibrahim1, Suchada Chantrapromma3, Hoong-Kun Fun4.   

Abstract

In the title complex, [Pd(C16H16NO2)2]·CHCl3, the Pd(II) cation lies on an inversion center. One Cl atom of the CHCl3 solvent mol-ecule lies on a twofold axis and the C-H group is disordered with equal occupancies about this axis with the other Cl atom in a general position with full occupancy. The Pd(II) cation is four-coordinate and adopts a square-planar geometry via coordination of the imine N and phenolic O atoms of the two bidentate Schiff base anions. The N and O atoms of these ligands are mutually trans. The plane of the benzene ring makes a dihedral angle of 73.52 (10)° with that of the meth-oxy-phenolate ring. In the crystal, mol-ecules of the Pd(II) complex are arranged into sheets parallel to the ac plane, and the chloro-form solvent mol-ecules are located in the inter-stitial areas between the complex mol-ecules. Weak inter-molecular C-H⋯O and C-H⋯π inter-actions stabilize the packing.

Entities:  

Keywords:  crystal structure

Year:  2014        PMID: 25249876      PMCID: PMC4158526          DOI: 10.1107/S1600536814015025

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Bahron et al. (2011 ▶); Halder et al. (2008 ▶). For background to and applications of PdII complexes, see: Bowes et al. (2011 ▶); Geeta et al. (2010 ▶); Gupta & Sutar (2008 ▶); Kalita et al. (2014 ▶); Mohd Tajuddin et al. (2012 ▶); Tamizh & Karvembu (2012 ▶).

Experimental

Crystal data

[Pd(C16H16NO2)2]·CHCl3 M = 734.36 Monoclinic, a = 31.9861 (8) Å b = 5.9668 (2) Å c = 22.6135 (5) Å β = 134.885 (1)° V = 3057.92 (15) Å3 Z = 4 Mo Kα radiation μ = 0.91 mm−1 T = 100 K 0.48 × 0.25 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.669, T max = 0.853 43800 measured reflections 5542 independent reflections 5006 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.073 S = 1.05 5542 reflections 204 parameters H-atom parameters constrained Δρmax = 1.24 e Å−3 Δρmin = −1.90 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814015025/sj5416sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015025/sj5416Isup2.hkl CCDC reference: 1010352 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Pd(C16H16NO)2]·CHCl3F(000) = 1496
Mr = 734.36Dx = 1.595 Mg m3
Monoclinic, C2/cMelting point = 509–511 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 31.9861 (8) ÅCell parameters from 5542 reflections
b = 5.9668 (2) Åθ = 1.8–32.5°
c = 22.6135 (5) ŵ = 0.91 mm1
β = 134.885 (1)°T = 100 K
V = 3057.92 (15) Å3Block, orange
Z = 40.48 × 0.25 × 0.18 mm
Bruker APEXII CCD area-detector diffractometer5542 independent reflections
Radiation source: sealed tube5006 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
φ and ω scansθmax = 32.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −48→48
Tmin = 0.669, Tmax = 0.853k = −9→8
43800 measured reflectionsl = −33→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.029P)2 + 8.064P] where P = (Fo2 + 2Fc2)/3
5542 reflections(Δ/σ)max = 0.001
204 parametersΔρmax = 1.24 e Å3
0 restraintsΔρmin = −1.90 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Pd10.25000.75000.50000.01355 (4)
O10.27424 (5)0.77360 (19)0.44058 (7)0.0199 (2)
O20.29036 (5)0.7333 (2)0.34385 (7)0.0216 (2)
N10.29650 (5)1.0260 (2)0.56892 (7)0.0161 (2)
C10.30562 (6)0.9327 (2)0.44764 (8)0.0163 (2)
C20.31517 (6)0.9175 (3)0.39460 (9)0.0182 (2)
C30.34628 (7)1.0811 (3)0.39600 (9)0.0230 (3)
H3A0.35171.06930.36070.028*
C40.36987 (8)1.2650 (3)0.44999 (10)0.0256 (3)
H4A0.39091.37430.45050.031*
C50.36196 (7)1.2838 (3)0.50202 (10)0.0229 (3)
H5A0.37771.40610.53780.028*
C60.32999 (6)1.1187 (2)0.50177 (8)0.0172 (2)
C70.32398 (6)1.1514 (2)0.55844 (9)0.0176 (2)
H7A0.34211.27860.59180.021*
C80.30159 (6)1.0981 (3)0.63693 (9)0.0180 (2)
H8A0.26761.04510.62490.022*
H8B0.30201.26050.63930.022*
C90.35728 (6)1.0068 (2)0.72040 (9)0.0169 (2)
C100.40868 (7)1.1352 (3)0.77237 (9)0.0215 (3)
H10A0.40831.27780.75550.026*
C110.46054 (7)1.0533 (3)0.84920 (10)0.0245 (3)
H11A0.49431.14180.88290.029*
C120.46238 (7)0.8403 (3)0.87610 (9)0.0220 (3)
C130.41100 (7)0.7121 (3)0.82397 (10)0.0213 (3)
H13A0.41140.56950.84090.026*
C140.35894 (7)0.7929 (3)0.74686 (9)0.0197 (3)
H14A0.32530.70380.71300.024*
C150.30447 (7)0.6982 (3)0.29710 (10)0.0257 (3)
H15A0.29030.55380.27080.039*
H15B0.34650.70470.33390.039*
H15C0.28610.81250.25520.039*
C160.51830 (8)0.7502 (3)0.95912 (11)0.0325 (4)
H16A0.55140.79140.96800.049*
H16B0.51600.58990.95930.049*
H16C0.52320.81191.00290.049*
C170.00983 (14)0.8371 (6)0.2433 (2)0.0230 (6)0.50
H17A0.02590.83620.22000.028*0.50
Cl10.00001.12294 (11)0.25000.04186 (16)
Cl20.05936 (2)0.70272 (10)0.33308 (4)0.04878 (16)
U11U22U33U12U13U23
Pd10.01277 (6)0.01580 (7)0.01323 (7)−0.00043 (4)0.00959 (6)−0.00051 (4)
O10.0230 (5)0.0231 (5)0.0223 (5)−0.0064 (4)0.0191 (5)−0.0050 (4)
O20.0230 (5)0.0280 (6)0.0217 (5)−0.0055 (4)0.0185 (5)−0.0047 (4)
N10.0145 (5)0.0181 (5)0.0143 (5)0.0009 (4)0.0097 (4)−0.0003 (4)
C10.0133 (5)0.0203 (6)0.0138 (5)0.0002 (4)0.0090 (5)0.0020 (4)
C20.0144 (5)0.0243 (7)0.0141 (5)−0.0012 (5)0.0095 (5)0.0014 (5)
C30.0205 (6)0.0314 (8)0.0182 (6)−0.0042 (6)0.0141 (6)0.0022 (6)
C40.0247 (7)0.0297 (8)0.0210 (7)−0.0081 (6)0.0156 (6)0.0016 (6)
C50.0213 (7)0.0251 (7)0.0179 (6)−0.0064 (5)0.0122 (6)−0.0005 (5)
C60.0144 (5)0.0200 (6)0.0132 (5)−0.0006 (5)0.0083 (5)0.0019 (5)
C70.0152 (5)0.0179 (6)0.0147 (5)−0.0001 (5)0.0088 (5)0.0001 (4)
C80.0182 (6)0.0192 (6)0.0181 (6)0.0007 (5)0.0134 (5)−0.0023 (5)
C90.0177 (6)0.0191 (6)0.0159 (5)−0.0001 (5)0.0126 (5)−0.0029 (5)
C100.0219 (6)0.0203 (6)0.0191 (6)−0.0032 (5)0.0134 (6)−0.0033 (5)
C110.0206 (6)0.0264 (7)0.0186 (6)−0.0046 (6)0.0111 (6)−0.0043 (5)
C120.0207 (6)0.0271 (7)0.0173 (6)0.0025 (5)0.0131 (6)−0.0005 (5)
C130.0235 (7)0.0220 (6)0.0213 (6)0.0017 (5)0.0168 (6)0.0008 (5)
C140.0197 (6)0.0223 (6)0.0192 (6)−0.0014 (5)0.0145 (6)−0.0016 (5)
C150.0249 (7)0.0374 (9)0.0234 (7)−0.0029 (6)0.0202 (6)−0.0036 (6)
C160.0251 (8)0.0385 (10)0.0215 (7)0.0054 (7)0.0120 (7)0.0050 (7)
C170.0241 (14)0.0232 (14)0.0245 (14)−0.0037 (11)0.0181 (12)−0.0041 (11)
Cl10.0565 (4)0.0199 (3)0.0593 (5)0.0000.0445 (4)0.000
Cl20.0256 (2)0.0353 (2)0.0438 (3)0.00892 (18)0.0097 (2)−0.0081 (2)
Pd1—O1i1.9741 (10)C9—C141.395 (2)
Pd1—O11.9741 (10)C10—C111.393 (2)
Pd1—N12.0204 (12)C10—H10A0.9300
Pd1—N1i2.0204 (12)C11—C121.392 (2)
O1—C11.3069 (17)C11—H11A0.9300
O2—C21.3672 (19)C12—C131.393 (2)
O2—C151.4279 (18)C12—C161.508 (2)
N1—C71.2971 (19)C13—C141.396 (2)
N1—C81.4911 (18)C13—H13A0.9300
C1—C61.411 (2)C14—H14A0.9300
C1—C21.4344 (19)C15—H15A0.9600
C2—C31.378 (2)C15—H15B0.9600
C3—C41.401 (2)C15—H15C0.9600
C3—H3A0.9300C16—H16A0.9600
C4—C51.372 (2)C16—H16B0.9600
C4—H4A0.9300C16—H16C0.9600
C5—C61.417 (2)C17—C17ii0.871 (6)
C5—H5A0.9300C17—Cl21.654 (3)
C6—C71.437 (2)C17—Cl11.760 (3)
C7—H7A0.9300C17—Cl2ii1.769 (3)
C8—C91.512 (2)C17—H17A0.9604
C8—H8A0.9700Cl1—C17ii1.760 (3)
C8—H8B0.9700Cl2—C17ii1.769 (3)
C9—C101.394 (2)
O1i—Pd1—O1180.000 (1)C10—C9—C8120.25 (14)
O1i—Pd1—N187.83 (5)C14—C9—C8121.32 (13)
O1—Pd1—N192.17 (5)C11—C10—C9121.09 (15)
O1i—Pd1—N1i92.17 (5)C11—C10—H10A119.5
O1—Pd1—N1i87.83 (5)C9—C10—H10A119.5
N1—Pd1—N1i180.0C12—C11—C10120.73 (15)
C1—O1—Pd1127.25 (9)C12—C11—H11A119.6
C2—O2—C15116.10 (12)C10—C11—H11A119.6
C7—N1—C8115.30 (12)C11—C12—C13118.08 (14)
C7—N1—Pd1123.66 (10)C11—C12—C16121.11 (16)
C8—N1—Pd1121.04 (9)C13—C12—C16120.82 (16)
O1—C1—C6125.72 (13)C12—C13—C14121.50 (15)
O1—C1—C2116.75 (13)C12—C13—H13A119.2
C6—C1—C2117.52 (13)C14—C13—H13A119.2
O2—C2—C3124.80 (13)C9—C14—C13120.18 (14)
O2—C2—C1114.39 (12)C9—C14—H14A119.9
C3—C2—C1120.81 (14)C13—C14—H14A119.9
C2—C3—C4120.72 (14)O2—C15—H15A109.5
C2—C3—H3A119.6O2—C15—H15B109.5
C4—C3—H3A119.6H15A—C15—H15B109.5
C5—C4—C3119.97 (15)O2—C15—H15C109.5
C5—C4—H4A120.0H15A—C15—H15C109.5
C3—C4—H4A120.0H15B—C15—H15C109.5
C4—C5—C6120.60 (15)C12—C16—H16A109.5
C4—C5—H5A119.7C12—C16—H16B109.5
C6—C5—H5A119.7H16A—C16—H16B109.5
C1—C6—C5120.37 (13)C12—C16—H16C109.5
C1—C6—C7122.75 (13)H16A—C16—H16C109.5
C5—C6—C7116.89 (14)H16B—C16—H16C109.5
N1—C7—C6128.23 (14)C17ii—C17—Cl282.7 (4)
N1—C7—H7A115.9C17ii—C17—Cl175.67 (10)
C6—C7—H7A115.9Cl2—C17—Cl1115.99 (18)
N1—C8—C9111.02 (11)C17ii—C17—Cl2ii68.1 (4)
N1—C8—H8A109.4Cl2—C17—Cl2ii115.65 (19)
C9—C8—H8A109.4Cl1—C17—Cl2ii110.29 (18)
N1—C8—H8B109.4C17ii—C17—H17A171.5
C9—C8—H8B109.4Cl2—C17—H17A104.5
H8A—C8—H8B108.0Cl1—C17—H17A104.5
C10—C9—C14118.42 (14)Cl2ii—C17—H17A104.4
N1—Pd1—O1—C1−4.24 (13)C4—C5—C6—C7179.83 (15)
N1i—Pd1—O1—C1175.76 (13)C8—N1—C7—C6176.22 (13)
O1i—Pd1—N1—C7−175.14 (12)Pd1—N1—C7—C6−3.4 (2)
O1—Pd1—N1—C74.86 (12)C1—C6—C7—N1−0.7 (2)
O1i—Pd1—N1—C85.26 (10)C5—C6—C7—N1179.23 (15)
O1—Pd1—N1—C8−174.74 (10)C7—N1—C8—C9−85.20 (15)
Pd1—O1—C1—C61.8 (2)Pd1—N1—C8—C994.43 (13)
Pd1—O1—C1—C2−177.17 (10)N1—C8—C9—C1093.72 (16)
C15—O2—C2—C37.9 (2)N1—C8—C9—C14−85.35 (16)
C15—O2—C2—C1−173.07 (13)C14—C9—C10—C11−0.4 (2)
O1—C1—C2—O2−0.92 (19)C8—C9—C10—C11−179.47 (14)
C6—C1—C2—O2180.00 (12)C9—C10—C11—C120.1 (2)
O1—C1—C2—C3178.12 (14)C10—C11—C12—C130.1 (2)
C6—C1—C2—C3−1.0 (2)C10—C11—C12—C16179.97 (16)
O2—C2—C3—C4179.63 (15)C11—C12—C13—C140.0 (2)
C1—C2—C3—C40.7 (2)C16—C12—C13—C14−179.83 (15)
C2—C3—C4—C5−0.2 (3)C10—C9—C14—C130.5 (2)
C3—C4—C5—C6−0.1 (3)C8—C9—C14—C13179.60 (13)
O1—C1—C6—C5−178.26 (14)C12—C13—C14—C9−0.3 (2)
C2—C1—C6—C50.7 (2)Cl2—C17—Cl1—C17ii−74.3 (4)
O1—C1—C6—C71.7 (2)Cl2ii—C17—Cl1—C17ii59.6 (4)
C2—C1—C6—C7−179.34 (13)Cl1—C17—Cl2—C17ii70.1 (2)
C4—C5—C6—C1−0.2 (2)Cl2ii—C17—Cl2—C17ii−61.4 (3)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O1i0.972.192.806 (2)120
C14—H14A···O1i0.932.573.284 (2)134
C17—H17A···Cg1i0.962.833.648 (5)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C9–C14 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8A⋯O1i 0.972.192.806 (2)120
C14—H14A⋯O1i 0.932.573.284 (2)134
C17—H17ACg1i 0.962.833.648 (5)144

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Binuclear cobalt(II), nickel(II), copper(II) and palladium(II) complexes of a new Schiff-base as ligand: synthesis, structural characterization, and antibacterial activity.

Authors:  B Geeta; K Shravankumar; P Muralidhar Reddy; E Ravikrishna; M Sarangapani; K Krishna Reddy; V Ravinder
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2010-08-10       Impact factor: 4.098

3.  Bis{2-[(E)-(4-fluoro-benz-yl)imino-meth-yl]-6-meth-oxy-phenolato}palladium(II).

Authors:  Hadariah Bahron; Amalina Mohd Tajuddin; Wan Nazihah Wan Ibrahim; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

4.  Bis{2-[(E)-(4-fluoro-benz-yl)imino-meth-yl]-6-meth-oxy-phenolato-κN,O}nickel(II).

Authors:  Hadariah Bahron; Amalina Mohd Tajuddin; Wan Nazihah Wan Ibrahim; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Crystal structure of bis-(2-{1-[(E)-(4-fluoro-benz-yl)imino]-eth-yl}phenolato-κ(2) N,O)palladium(II).

Authors:  Amalina Mohd Tajuddin; Hadariah Bahron; Hamizah Mohd Zaki; Karimah Kassim; Suchada Chantrapromma
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-03-11
  1 in total

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