Literature DB >> 25249870

Crystal structure of bis-[1-(naphthalen-1-ylmeth-yl)pyridinium] bis-(2,2-di-cyano-ethene-1,1-di-thiol-ato-κ(2) S,S')nickelate(II).

Miao Zhang1, Xu-Jie Xiong2.   

Abstract

A new ion-pair complex, (C16H14N)2[Ni(C4N2S2)2] or (1-NaMePy)2[Ni(imnt)2], where 1-NaMePy is 1-(4-naphthyl-methyl-ene)pyridinium and imnt is 2,2-di-cyano-ethene-1,1-di-thiol-ate, was obtained by the direct reaction of NiCl2, K2imnt and (1-NaMePy)(+)Br(-) in H2O. The asymmetric unit contains a [1-NaMePy](+) cation and one half of an Ni(imnt)2 (2-) anion. The Ni(II) ion lies on an inversion centre and adopts a square-planar configuration with Ni-S bond lengths of 2.200 (1) and 2.216 (1) Å. In the [1-NaMePy](+) cation, the naphthyl ringsystem and the pyridinium ring make a dihedral angle of 90.0 (2)°. In the crystal, C-H⋯N and C-H⋯Ni hydrogen bonds, as well as π-π inter-actions between the chelate ring and the pyridinium ring [centroid-centroid distance = 3.675 (2) Å] link the ions into a three-dimensional network.

Entities:  

Keywords:  bis­(2,2-bi­cyano­ethene-1,1-di­thiol­ato)nickel(II); crystal structure.; hydrogen bonding; pyridinium; π–π inter­action

Year:  2014        PMID: 25249870      PMCID: PMC4158505          DOI: 10.1107/S1600536814017012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Chemical context

Transition metal complexes with di­thiol­ate ligands such as 2,2-di­cyano­ethene-1,1-di­thiol­ate (imnt) or 1,2-di­cyano­ethene-1,2-di­thiol­ate (mnt) are important mol­ecular materials with inter­esting electrical conductivity, superconductivity, optical and magnetic properties (Liu et al., 1996 ▶; Robertson & Cronin, 2002 ▶; Ni et al., 2005 ▶; Ren et al., 2002 ▶; Xie et al., 2002 ▶; Duan et al. 2010 ▶). Recently, attempts have been made to extend the range of metal complexes containing the Ni(imnt)2 2− anion, and the topology and the size of some organic cations, such as substituted benzyl pyridinium derivatives, play an important role in tuning the stacks of anions and cations of mol­ecular materials containing the Ni(imnt)2 2− anion (Liu et al., 2006 ▶; Feng et al., 2007 ▶). The title ion-pair complex, (1-NaMePy)2[Ni(imnt)2] has therefore been prepared and investigated.

Structural commentary

The asymmetric unit of the title compound consists of one [1-NaMePy]+ cation and one-half of an Ni(imnt)2 2− anion located about an inversion center. The NiS4 core exhibits a square-planar configuration, with Ni—S bond lengths of 2.200 (1) and 2.216 (1) Å. The S1—Ni1—S2 bond angle within the four-membered ring (Ni1/S1/C1/S2) is 78.91 (3)°. The N1 and N2 atoms of the C N groups deviate from the Ni1/S1/C1/S2 plane by 0.078 (3) and 0.169 (3) Å, respectively. The [1-NaMePy]+ cation adopts a conformation in which both the naphthyl ring system and the pyridinium ring are twisted with respect to the N3/C11/C10 reference plane, making dihedral angles of 10.5 (2)° and 87.3 (3)°, respectively. The naphthyl ring system and the pyridinium ring make a dihedral angle of 90.0 (2)°.

Supra­molecular features

There are three weak inter­actions between the Ni(imnt)2 2− anion and [1-NaMePy]+ cation. The first is a π–π contact between the chelate ring (which is defined by atoms Ni1, S1, S2, and C1) of the anion and the pyridinium ring of the cation (Fig. 2 ▶) with a distance of 3.675 (2) Å between the centroids. The second is a C—H⋯Ni hydrogen bond and the third is a C—H⋯N hydrogen bond (Table 1 ▶, Fig. 3 ▶). The combination of these weak inter­actions consolidates the title complex into a three-dimensional network structure (Fig. 3 ▶).
Figure 2

The π–π contact between the chelate ring of the anion and the pyridinium ring of the cation (shown as a dashed line).

Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C19—H19⋯N2i 0.932.603.265 (5)129
C20—H20⋯N1ii 0.932.423.304 (5)160
C15—H15B⋯Ni1iii 0.973.073.508 (4)109

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 3

The packing of the title compound, viewed down the a axis, showing the network of mol­ecules connected by C—H⋯N hydrogen bonds (dashed lines).

Database survey

Many ion-pair complexes containing Ni(imnt)2 2− anion have been reported, typical examples being [TBA]2[Ni(imnt)2] and [4NO2BzPy]2[Ni(imnt)2] [TBA is tetra­butyl­ammonium; 4NO2BzPy is 1-(4-nitro­benz­yl)pyridinium] (Liu et al., 2006 ▶), [4FBzPy]2[Ni(imnt)2] [4FBzPy is 1-(4-fluoro­benz­yl)pyrid­in­ium] (Zhou & Ni, 2007 ▶), [Bz2NH2Py]2[Ni(imnt)2] (Bz2NH2Py is 1-benzyl-2-amino­pyridinium) (Hou et al., 2007 ▶), [BzDMAP]2[Ni(imnt)2] [BzDMAP is 1-benzyl-4-(di­methyl­amino)­pyridinium] (Feng et al., 2007 ▶), [2-NaMePy]2[Ni(imnt)2] and [2-NaMe-4-MePy]2[Ni(imnt)2] [2-NaMePy is 1-(2-naphthyl­meth­yl)pyridinium; 2-NaMe-4-MePy is 1-(2-naphthyl­meth­yl)-4-methyl­pyridinium] (Huang et al., 2009 ▶), [Bz-4-MePy]2[Ni(imnt)2] and [Bz-4-MeQl]2[Ni(imnt)2] (Bz-4-MePy is 1-benzyl-4-methyl­pyridinium; Bz-4-MeQl is 1-benzyl-4-methyl­quinolinium) (Liu et al., 2013 ▶). For a description of C—H⋯N and C—H⋯Ni hydrogen bonds, see: Huang et al., (2009 ▶). For a description of π–π contacts between chelate and phenyl rings, see: Molčanov et al. (2013 ▶).

Synthesis and crystallization

The title ion-pair complex was prepared by the direct reaction of 1:2:2 mol equiv. of NiCl2·6H2O, K2imnt and 1-(4-naphthyl­methyl­ene)pyridinium bromide in water (Huang et al., 2009 ▶). The brown product obtained was purified through recrystallization from a mixed solvent of methanol and water (yield: 78%). Brown block-shaped single crystals suitable for X-ray analysis were obtained by slow evaporation of a methanol solution at room temperature after about 4 weeks.

Refinement

All H-atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.93 Å, U iso(H) = 1.2U eq(C) for aromatic and d(C—H) = 0.97 Å, U iso(H) = 1.2U eq(C) for CH2 atoms. Crystal data, data collection and structure refinement details are summarized in Table 2 ▶.
Table 2

Experimental details

Crystal data
Chemical formula(C16H14N)2[Ni(C4N2S2)2]
M r 779.63
Crystal system, space groupMonoclinic, P21/c
Temperature (K)291
a, b, c (Å)11.876 (3), 9.025 (3), 17.465 (5)
β (°)91.808 (4)
V3)1871.0 (9)
Z 2
Radiation typeMo Kα
μ (mm−1)0.78
Crystal size (mm)0.36 × 0.30 × 0.21
 
Data collection
DiffractometerBruker SMART CCD area detector
Absorption correctionMulti-scan (SADABS; Bruker, 2000)
T min, T max 0.762, 0.843
No. of measured, independent and observed [I > 2σ(I)] reflections9345, 3283, 2228
R int 0.031
(sin θ/λ)max−1)0.595
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.040, 0.102, 1.04
No. of reflections3283
No. of parameters232
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.21, −0.15

Computer programs: SMART and SAINT (Bruker, 2000 ▶) and SHELXTL (Sheldrick, 2008 ▶).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814017012/kp2472sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814017012/kp2472Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814017012/kp2472Isup3.cml CCDC reference: 1015644 Additional supporting information: crystallographic information; 3D view; checkCIF report
(C16H14N)2[Ni(C4N2S2)2]F(000) = 804
Mr = 779.63Dx = 1.384 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1994 reflections
a = 11.876 (3) Åθ = 2.5–22.7°
b = 9.025 (3) ŵ = 0.78 mm1
c = 17.465 (5) ÅT = 291 K
β = 91.808 (4)°Block, brown
V = 1871.0 (9) Å30.36 × 0.30 × 0.21 mm
Z = 2
Bruker SMART CCD area detector diffractometer3283 independent reflections
Radiation source: fine-focus sealed tube2228 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −13→14
Tmin = 0.762, Tmax = 0.843k = −9→10
9345 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.046P)2 + 0.1262P] where P = (Fo2 + 2Fc2)/3
3283 reflections(Δ/σ)max < 0.001
232 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.00000.00000.06043 (19)
S10.03025 (7)0.02841 (8)0.12405 (4)0.0697 (2)
S20.08762 (7)0.21679 (9)0.00355 (4)0.0709 (2)
N10.2232 (3)0.5408 (4)0.11604 (17)0.1156 (12)
N20.1247 (3)0.2483 (3)0.29836 (16)0.0963 (9)
N30.2381 (2)0.7148 (3)0.42980 (16)0.0805 (7)
C10.0909 (2)0.1950 (3)0.10140 (14)0.0616 (7)
C20.1329 (2)0.2957 (3)0.15460 (14)0.0628 (7)
C30.1819 (3)0.4313 (4)0.13254 (16)0.0792 (9)
C40.1274 (3)0.2685 (3)0.23417 (17)0.0704 (8)
C50.4644 (3)0.7646 (4)0.4864 (2)0.1009 (11)
H50.44080.79810.43820.121*
C60.5731 (3)0.8033 (5)0.5164 (3)0.1080 (13)
H60.62120.86040.48750.130*
C70.6062 (3)0.7565 (4)0.5872 (2)0.1045 (12)
H70.67680.78430.60690.125*
C80.5373 (3)0.6678 (4)0.6314 (2)0.0817 (9)
C90.5710 (3)0.6177 (4)0.7054 (2)0.0983 (11)
H90.64100.64670.72550.118*
C100.5068 (4)0.5308 (5)0.7473 (3)0.1114 (13)
H100.53140.49920.79560.134*
C110.4017 (4)0.4881 (5)0.7169 (3)0.1169 (14)
H110.35630.42660.74550.140*
C120.3642 (3)0.5342 (4)0.6470 (2)0.0957 (11)
H120.29330.50470.62860.115*
C130.4307 (3)0.6261 (3)0.6015 (2)0.0769 (9)
C140.3947 (3)0.6786 (4)0.5280 (2)0.0812 (9)
C150.2770 (3)0.6348 (4)0.4999 (2)0.1096 (13)
H15A0.27590.52920.48950.131*
H15B0.22460.65390.54020.131*
C160.2514 (4)0.6590 (5)0.3620 (3)0.1198 (14)
H160.28660.56760.35730.144*
C170.2150 (5)0.7315 (7)0.2989 (3)0.1362 (19)
H170.22640.69170.25060.163*
C180.1615 (4)0.8632 (6)0.3060 (3)0.1177 (15)
H180.13460.91360.26270.141*
C190.1477 (3)0.9203 (4)0.3761 (3)0.1004 (11)
H190.11181.01090.38210.120*
C200.1868 (3)0.8436 (4)0.43750 (19)0.0822 (9)
H200.17750.88210.48630.099*
U11U22U33U12U13U23
Ni10.0607 (3)0.0696 (4)0.0503 (3)0.0003 (3)−0.0087 (2)−0.0033 (2)
S10.0793 (5)0.0764 (5)0.0527 (4)−0.0091 (4)−0.0100 (4)0.0017 (4)
S20.0824 (5)0.0771 (5)0.0528 (4)−0.0074 (4)−0.0057 (4)−0.0001 (4)
N10.173 (3)0.094 (2)0.080 (2)−0.040 (2)−0.010 (2)0.0011 (17)
N20.130 (3)0.097 (2)0.0603 (16)0.0021 (18)−0.0146 (16)−0.0046 (15)
N30.0765 (18)0.083 (2)0.0818 (19)−0.0104 (15)−0.0064 (15)0.0020 (16)
C10.0571 (16)0.0696 (18)0.0577 (15)0.0041 (14)−0.0062 (13)−0.0005 (14)
C20.0666 (18)0.0695 (19)0.0517 (16)−0.0009 (15)−0.0079 (13)−0.0009 (14)
C30.100 (3)0.081 (2)0.0552 (18)−0.008 (2)−0.0128 (17)−0.0031 (17)
C40.076 (2)0.072 (2)0.0625 (19)0.0008 (16)−0.0157 (15)−0.0052 (16)
C50.079 (2)0.106 (3)0.118 (3)−0.009 (2)−0.004 (2)0.026 (2)
C60.068 (2)0.118 (3)0.139 (4)−0.026 (2)0.012 (2)0.022 (3)
C70.079 (3)0.111 (3)0.122 (3)−0.014 (2)−0.011 (2)0.005 (3)
C80.065 (2)0.071 (2)0.109 (3)−0.0020 (17)0.005 (2)−0.004 (2)
C90.084 (3)0.102 (3)0.108 (3)0.007 (2)−0.015 (2)0.006 (2)
C100.103 (3)0.127 (3)0.104 (3)0.017 (3)−0.005 (3)0.019 (3)
C110.097 (3)0.120 (3)0.133 (4)0.010 (3)0.003 (3)0.047 (3)
C120.070 (2)0.100 (3)0.117 (3)0.000 (2)−0.002 (2)0.028 (2)
C130.064 (2)0.0643 (19)0.103 (2)0.0054 (16)0.0043 (19)0.0066 (18)
C140.063 (2)0.077 (2)0.103 (2)−0.0091 (17)−0.0005 (18)0.0121 (19)
C150.086 (3)0.119 (3)0.122 (3)−0.025 (2)−0.024 (2)0.046 (3)
C160.143 (4)0.103 (3)0.114 (3)0.002 (3)0.019 (3)−0.020 (3)
C170.184 (5)0.153 (5)0.073 (3)−0.048 (4)0.010 (3)−0.032 (3)
C180.117 (4)0.140 (4)0.094 (3)−0.035 (3)−0.030 (3)0.034 (3)
C190.095 (3)0.095 (3)0.111 (3)−0.003 (2)−0.007 (2)0.012 (3)
C200.088 (2)0.086 (2)0.072 (2)−0.013 (2)−0.0014 (18)−0.0120 (19)
Ni1—S1i2.2000 (9)C8—C91.415 (5)
Ni1—S12.2000 (9)C9—C101.329 (5)
Ni1—S2i2.2160 (9)C9—H90.9300
Ni1—S22.2160 (9)C10—C111.395 (6)
S1—C11.718 (3)C10—H100.9300
S2—C11.719 (3)C11—C121.353 (5)
N1—C31.144 (4)C11—H110.9300
N2—C41.137 (3)C12—C131.409 (4)
N3—C161.300 (5)C12—H120.9300
N3—C201.321 (4)C13—C141.420 (4)
N3—C151.482 (4)C14—C151.519 (4)
C1—C21.382 (4)C15—H15A0.9700
C2—C31.414 (4)C15—H15B0.9700
C2—C41.415 (4)C16—C171.342 (6)
C5—C141.361 (4)C16—H160.9300
C5—C61.421 (5)C17—C181.355 (6)
C5—H50.9300C17—H170.9300
C6—C71.353 (5)C18—C191.344 (5)
C6—H60.9300C18—H180.9300
C7—C81.395 (5)C19—C201.346 (5)
C7—H70.9300C19—H190.9300
C8—C131.406 (4)C20—H200.9300
S1i—Ni1—S1180.00 (4)C9—C10—H10120.8
S1i—Ni1—S2i78.91 (3)C11—C10—H10120.8
S1—Ni1—S2i101.09 (3)C12—C11—C10121.6 (4)
S1i—Ni1—S2101.09 (3)C12—C11—H11119.2
S1—Ni1—S278.91 (3)C10—C11—H11119.2
S2i—Ni1—S2180.00 (4)C11—C12—C13121.1 (4)
C1—S1—Ni186.09 (9)C11—C12—H12119.5
C1—S2—Ni185.56 (10)C13—C12—H12119.5
C16—N3—C20120.2 (3)C8—C13—C12117.5 (3)
C16—N3—C15121.3 (4)C8—C13—C14119.2 (3)
C20—N3—C15118.5 (3)C12—C13—C14123.2 (3)
C2—C1—S1124.5 (2)C5—C14—C13120.1 (3)
C2—C1—S2126.1 (2)C5—C14—C15122.9 (3)
S1—C1—S2109.42 (15)C13—C14—C15117.0 (3)
C1—C2—C3121.9 (2)N3—C15—C14113.6 (3)
C1—C2—C4121.3 (3)N3—C15—H15A108.8
C3—C2—C4116.8 (3)C14—C15—H15A108.8
N1—C3—C2178.5 (4)N3—C15—H15B108.8
N2—C4—C2178.7 (4)C14—C15—H15B108.8
C14—C5—C6120.3 (4)H15A—C15—H15B107.7
C14—C5—H5119.9N3—C16—C17120.9 (4)
C6—C5—H5119.9N3—C16—H16119.5
C7—C6—C5119.6 (3)C17—C16—H16119.5
C7—C6—H6120.2C16—C17—C18119.4 (4)
C5—C6—H6120.2C16—C17—H17120.3
C6—C7—C8121.7 (4)C18—C17—H17120.3
C6—C7—H7119.1C19—C18—C17119.4 (4)
C8—C7—H7119.1C19—C18—H18120.3
C7—C8—C13119.0 (3)C17—C18—H18120.3
C7—C8—C9122.3 (3)C18—C19—C20118.7 (4)
C13—C8—C9118.6 (3)C18—C19—H19120.7
C10—C9—C8122.7 (4)C20—C19—H19120.7
C10—C9—H9118.6N3—C20—C19121.3 (3)
C8—C9—H9118.6N3—C20—H20119.3
C9—C10—C11118.4 (4)C19—C20—H20119.3
D—H···AD—HH···AD···AD—H···A
C19—H19···N2ii0.932.603.265 (5)129
C20—H20···N1iii0.932.423.304 (5)160
C15—H15B···Ni1iv0.973.073.508 (4)109
  5 in total

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2.  A short history of SHELX.

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Journal:  Dalton Trans       Date:  2013-11-28       Impact factor: 4.390

5.  Theoretical studies on the magnetic switching controlled by stacking patterns of bis(maleonitriledithiolato) nickelate(III) dimers.

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