Literature DB >> 25248454

Evolutionary game theory: molecules as players.

Katrin Bohl1, Sabine Hummert, Sarah Werner, David Basanta, Andreas Deutsch, Stefan Schuster, Günter Theissen, Anja Schroeter.   

Abstract

In this and an accompanying paper we review the use of game theoretical concepts in cell biology and molecular biology. This review focuses on the subcellular level by considering viruses, genes, and molecules as players. We discuss in which way catalytic RNA can be treated by game theory. Moreover, genes can compete for success in replication and can have different strategies in interactions with other genetic elements. Also transposable elements, or "jumping genes", can act as players because they usually bear different traits or strategies. Viruses compete in the case of co-infecting a host cell. Proteins interact in a game theoretical sense when forming heterodimers. Finally, we describe how the Shapley value can be applied to enzymes in metabolic pathways. We show that game theory can be successfully applied to describe and analyse scenarios at the molecular level resulting in counterintuitive conclusions.

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Year:  2014        PMID: 25248454     DOI: 10.1039/c3mb70601j

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  14 in total

1.  Origin of biomolecular games: deception and molecular evolution.

Authors:  Steven E Massey; Bud Mishra
Journal:  J R Soc Interface       Date:  2018-09       Impact factor: 4.118

2.  The prisoner's dilemma as a cancer model.

Authors:  Jeffrey West; Zaki Hasnain; Jeremy Mason; Paul K Newton
Journal:  Converg Sci Phys Oncol       Date:  2016-07-04

3.  Dynamics of prebiotic RNA reproduction illuminated by chemical game theory.

Authors:  Jessica A M Yeates; Christian Hilbe; Martin Zwick; Martin A Nowak; Niles Lehman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

4.  Identifying protein complexes in PPI network using non-cooperative sequential game.

Authors:  Ujjwal Maulik; Srinka Basu; Sumanta Ray
Journal:  Sci Rep       Date:  2017-08-21       Impact factor: 4.379

Review 5.  The biology and mathematical modelling of glioma invasion: a review.

Authors:  J C L Alfonso; K Talkenberger; M Seifert; B Klink; A Hawkins-Daarud; K R Swanson; H Hatzikirou; A Deutsch
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

6.  GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies.

Authors:  Mélanie Boudard; Julie Bernauer; Dominique Barth; Johanne Cohen; Alain Denise
Journal:  PLoS One       Date:  2015-08-27       Impact factor: 3.240

7.  Prebiotic RNA Network Formation: A Taxonomy of Molecular Cooperation.

Authors:  Cole Mathis; Sanjay N Ramprasad; Sara Imari Walker; Niles Lehman
Journal:  Life (Basel)       Date:  2017-10-16

8.  A New Solution Concept for the Ultimatum Game leading to the Golden Ratio.

Authors:  Stefan Schuster
Journal:  Sci Rep       Date:  2017-07-17       Impact factor: 4.379

9.  Selfish genetic elements and the gene's-eye view of evolution.

Authors:  J Arvid Ågren
Journal:  Curr Zool       Date:  2016-10-23       Impact factor: 2.624

10.  Deciphering the Counterplay of Aspergillus fumigatus Infection and Host Inflammation by Evolutionary Games on Graphs.

Authors:  Johannes Pollmächer; Sandra Timme; Stefan Schuster; Axel A Brakhage; Peter F Zipfel; Marc Thilo Figge
Journal:  Sci Rep       Date:  2016-06-13       Impact factor: 4.379

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