| Literature DB >> 25247155 |
K-H William Lau1, Nicoleta L Popa2, Charles H Rundle1.
Abstract
BACKGROUND: Cyclo-oxygenase-2 (Cox-2) is an inflammatory mediator that is necessary for the tissue repair, including bone fracture healing. Although the application of Cox-2 gene therapy to a murine closed femoral fracture has accelerated bony union, but the beneficial effect was not observed until the endochondral stage of bone repair that is well after the inflammatory stage normally subsides.Entities:
Keywords: Cyclooxygenase 2; Fracture healing; Gene expression; Genetic therapy; Microarray analysis
Year: 2014 PMID: 25247155 PMCID: PMC4170080 DOI: 10.11005/jbm.2014.21.3.169
Source DB: PubMed Journal: J Bone Metab ISSN: 2287-6375
Gene-specific primers for real-time reverse transcription-polymerase chain reaction measurement of fracture gene expression
bp, base pairs; hCox-2, human cyclo-oxygenase-2; PTGER, prostaglandin E2 receptors; PPIA, peptidylprolyl isomerase A (housekeeping gene).
Comparison of relative fold-changes in gene expression of selected genes determined by microarray and by real-time reverse transcription-polymerase chain reaction
a)Fold-change in gene expression at 10 days post-fracture, cyclo-oxygenase-2 versus control transgene.
b)Down-regulated gene expression in Table 4 was converted to negative fold-change for comparison with real-time RT-PCR.
GO, gene ontology; RT-PCR,reverse transcription-polymerase chain reaction; CXCL9, chemokine (C-X-C motif) ligand 9; CXCL10, chemokine (C-X-C motif) ligand 10; CCL8, chemokine (C-C motif) ligand 8; CCL7, chemokine (C-C motif) ligand 7; PF-4, platelet factor-4; IL-7αr, interleukin-7 alpha receptor; Ikzf3, IKAROS family zinc finger 3; IRF4, interferon regulatory factor 4; KLF1, Kruppel-like factor 1.
Fig. 1Real-time reverse transcription-polymerase chain reaction determination of prostaglandin E receptor (PTGER) gene expression in response to cyclo-oxygenase-2 (Cox-2) transgene at 10 days post-fracture. The three samples in each group size were from the same individuals that underwent microarray analysis. Statistics were performed by t-Test. PTGER, prostaglandin E2 receptors.
1.5-fold gene expression changes
Fig. 2Correlation of microarray and quantitative real-time reverse transcription-polymerase chain reaction measurements of gene expression for selected genes. The list of genes is shown in Table 2. The correlation coefficient was determined to be r=0.8. The genes below the 1-fold expression boundary displayed negatively regulated expression by each approach. RT-PCR, reverse transcription-polymerase chain reaction.
Leading edge analysis of gene set enrichment analysis
ES, enrichment score; GTPase, guanosine triphosphatase; ARF, ADP-ribosylation factor; MAPK,mitogen-activated protein kinase; ATP, adenosine triphosphate; REM, rapid eye movement; GABA, gamma-aminobutyric acid.
Fig. 3A model proposed for the functions of the genes expressed during fracture callus development in response to cyclo-oxygenase-2 (Cox-2) gene therapy (box). The stages of fracture callus healing normally present at 10 days post-fracture are indicated. IM, intramembranous; Cox-2, cyclo-oxygenase-2; PGE2, prostaglandin E2.