Literature DB >> 25245396

Phylogenetic networks that display a tree twice.

Paul Cordue1, Simone Linz, Charles Semple.   

Abstract

In the last decade, the use of phylogenetic networks to analyze the evolution of species whose past is likely to include reticulation events, such as horizontal gene transfer or hybridization, has gained popularity among evolutionary biologists. Nevertheless, the evolution of a particular gene can generally be described without reticulation events and therefore be represented by a phylogenetic tree. While this is not in contrast to each other, it places emphasis on the necessity of algorithms that analyze and summarize the tree-like information that is contained in a phylogenetic network. We contribute to the toolbox of such algorithms by investigating the question of whether or not a phylogenetic network embeds a tree twice and give a quadratic-time algorithm to solve this problem for a class of networks that is more general than tree-child networks.

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Year:  2014        PMID: 25245396     DOI: 10.1007/s11538-014-0032-x

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  2 in total

1.  Which Phylogenetic Networks are Merely Trees with Additional Arcs?

Authors:  Andrew R Francis; Mike Steel
Journal:  Syst Biol       Date:  2015-06-11       Impact factor: 15.683

2.  Phylogenetic network analysis as a parsimony optimization problem.

Authors:  Ward C Wheeler
Journal:  BMC Bioinformatics       Date:  2015-09-17       Impact factor: 3.169

  2 in total

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