Literature DB >> 25240884

A biochemical approach to identify direct microRNA targets.

Murugan Subramanian1, Xiao Ling Li, Toshifumi Hara, Ashish Lal.   

Abstract

We have recently developed a biochemical approach to isolate miRNA-bound mRNAs and have used this method to identify the genome-wide mRNAs regulated by the tumor suppressor miRNA miR-34a. This method involves transfection of cells with biotinylated miRNA mimics, streptavidin pulldown, RNA isolation, and qRT-PCR. The protocol in this chapter describes these steps and the issues that should be considered while designing such pulldown experiments.

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Year:  2015        PMID: 25240884      PMCID: PMC6378880          DOI: 10.1007/978-1-4939-1369-5_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  24 in total

Review 1.  The functions of animal microRNAs.

Authors:  Victor Ambros
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

2.  Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR.

Authors:  J Robin Lytle; Therese A Yario; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

3.  Isolation of microRNA targets by miRNP immunopurification.

Authors:  George Easow; Aurelio A Teleman; Stephen M Cohen
Journal:  RNA       Date:  2007-06-25       Impact factor: 4.942

4.  miR-519 reduces cell proliferation by lowering RNA-binding protein HuR levels.

Authors:  Kotb Abdelmohsen; Subramanya Srikantan; Yuki Kuwano; Myriam Gorospe
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-16       Impact factor: 11.205

5.  Widespread changes in protein synthesis induced by microRNAs.

Authors:  Matthias Selbach; Björn Schwanhäusser; Nadine Thierfelder; Zhuo Fang; Raya Khanin; Nikolaus Rajewsky
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

6.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.

Authors:  Lee P Lim; Nelson C Lau; Philip Garrett-Engele; Andrew Grimson; Janell M Schelter; John Castle; David P Bartel; Peter S Linsley; Jason M Johnson
Journal:  Nature       Date:  2005-01-30       Impact factor: 49.962

7.  The impact of microRNAs on protein output.

Authors:  Daehyun Baek; Judit Villén; Chanseok Shin; Fernando D Camargo; Steven P Gygi; David P Bartel
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

8.  The let-7 microRNA represses cell proliferation pathways in human cells.

Authors:  Charles D Johnson; Aurora Esquela-Kerscher; Giovanni Stefani; Mike Byrom; Kevin Kelnar; Dmitriy Ovcharenko; Mike Wilson; Xiaowei Wang; Jeffrey Shelton; Jaclyn Shingara; Lena Chin; David Brown; Frank J Slack
Journal:  Cancer Res       Date:  2007-08-15       Impact factor: 12.701

9.  Identification of human microRNA targets from isolated argonaute protein complexes.

Authors:  Michaela Beitzinger; Lasse Peters; Jia Yun Zhu; Elisabeth Kremmer; Gunter Meister
Journal:  RNA Biol       Date:  2007-06-28       Impact factor: 4.652

10.  Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis.

Authors:  Tsung-Cheng Chang; Erik A Wentzel; Oliver A Kent; Kalyani Ramachandran; Michael Mullendore; Kwang Hyuck Lee; Georg Feldmann; Munekazu Yamakuchi; Marcella Ferlito; Charles J Lowenstein; Dan E Arking; Michael A Beer; Anirban Maitra; Joshua T Mendell
Journal:  Mol Cell       Date:  2007-05-31       Impact factor: 17.970

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  15 in total

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Authors:  Dianke Yu; Leihong Wu; Pritmohinder Gill; William H Tolleson; Si Chen; Jinchun Sun; Bridgett Knox; Yaqiong Jin; Wenming Xiao; Huixiao Hong; Yong Wang; Zhen Ren; Lei Guo; Nan Mei; Yongli Guo; Xi Yang; Leming Shi; Yinting Chen; Linjuan Zeng; Kostiantyn Dreval; Volodymyr Tryndyak; Igor Pogribny; Hong Fang; Tieliu Shi; Sandra McCullough; Sudeepa Bhattacharyya; Laura Schnackenberg; William Mattes; Richard D Beger; Laura James; Weida Tong; Baitang Ning
Journal:  Arch Toxicol       Date:  2017-10-24       Impact factor: 5.153

2.  Long non-coding RNA H19 promotes glucose metabolism and cell growth in malignant melanoma via miR-106a-5p/E2F3 axis.

Authors:  Wenkang Luan; Zhou Zhou; Xin Ni; Yun Xia; Jinlong Wang; Yulan Yan; Bin Xu
Journal:  J Cancer Res Clin Oncol       Date:  2018-01-19       Impact factor: 4.553

3.  Long noncoding RNA MIR4435-2HG promotes hepatocellular carcinoma proliferation and metastasis through the miR-22-3p/YWHAZ axis.

Authors:  Xuanlin Shen; Yuting Ding; Feng Lu; Haitao Yuan; Wenkang Luan
Journal:  Am J Transl Res       Date:  2020-10-15       Impact factor: 4.060

4.  LncRNA-DANCR contributes to lung adenocarcinoma progression by sponging miR-496 to modulate mTOR expression.

Authors:  Qing-Chun Lu; Zhuang-Hua Rui; Zhong-Liang Guo; Wang Xie; Shan Shan; Tao Ren
Journal:  J Cell Mol Med       Date:  2017-12-20       Impact factor: 5.310

5.  Etv2-miR-130a-Jarid2 cascade regulates vascular patterning during embryogenesis.

Authors:  Bhairab N Singh; Naoyuki Tahara; Yasuhiko Kawakami; Satyabrata Das; Naoko Koyano-Nakagawa; Wuming Gong; Mary G Garry; Daniel J Garry
Journal:  PLoS One       Date:  2017-12-12       Impact factor: 3.240

6.  Blocking lncRNA H19-miR-19a-Id2 axis attenuates hypoxia/ischemia induced neuronal injury.

Authors:  Zhipeng Xiao; Yongming Qiu; Yingying Lin; Rogelio Medina; Sophie Zhuang; Jared S Rosenblum; Jing Cui; Zezhi Li; Xiaohua Zhang; Liemei Guo
Journal:  Aging (Albany NY)       Date:  2019-06-05       Impact factor: 5.682

7.  Long non-coding RNA SNHG5 promotes glioma progression via miR-205/E2F3 axis.

Authors:  Xiaojian Li; Liang Liu; Yidan Luo; Sitong Cui; Wei Chen; Ailiang Zeng; Yan Shi; Liangsheng Luo
Journal:  Biosci Rep       Date:  2019-07-18       Impact factor: 3.840

Review 8.  Experimental procedures to identify and validate specific mRNA targets of miRNAs.

Authors:  Terry S Elton; Jack C Yalowich
Journal:  EXCLI J       Date:  2015-07-02       Impact factor: 4.068

9.  Long non-coding RNA Malat1 promotes gallbladder cancer development by acting as a molecular sponge to regulate miR-206.

Authors:  Shou-Hua Wang; Wen-Jie Zhang; Xiao-Cai Wu; Ming-Di Zhang; Ming-Zhe Weng; Di Zhou; Jian-Dong Wang; Zhi-Wei Quan
Journal:  Oncotarget       Date:  2016-06-21

10.  Long non-coding RNA HOTAIR acts as a competing endogenous RNA to promote malignant melanoma progression by sponging miR-152-3p.

Authors:  Wenkang Luan; Rubo Li; Liang Liu; Xin Ni; Yan Shi; Yun Xia; Jinlong Wang; Feng Lu; Bin Xu
Journal:  Oncotarget       Date:  2017-08-03
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