| Literature DB >> 25240502 |
Anita Franczak1, Bartosz Wojciechowicz, Justyna Kolakowska, Kamila Zglejc, Genowefa Kotwica.
Abstract
In pigs, implantation begins with the attachment of embryos to the endometrium. As the process is regulated by the expression of numerous genes, endometrial transcriptomic profiles have been extensively studied in early gravid pigs. However, the myometrium, a secretory tissue, should not be neglected, as it can also participate in the regulation of implantation in early pregnant pigs. To clarify this issue, the transcriptomic profile of the porcine myometrium during the peri-implantation period (i.e. on days 15 to 16 of pregnancy) was compared with the profile observed during luteolysis (i.e. on days 15 to 16 of the oestrous cycle) with an Agilent's Porcine (V2) Two-Colour Gene Expression Microarray 4 × 44 (Agilent, USA). Analysis of the microarray data revealed that of 526 unique, accurately annotated genes, the expression of 271 unique genes was upregulated, while the expression of 255 genes was downregulated in pregnant versus cyclic myometrium. The in-depth data analysis revealed differential expression of genes encoding for factors involved in immunomodulation, tissue growth and differentiation, and prostaglandin and steroid biosynthesis and action. Moreover, the comparison of the obtained data on the myometrial transcriptome with our previously published results on the endometrial transcriptome allowed us to determine substantial differences in the regulatory function of both tissues. The new insights into the function of the myometrium of early pregnant pigs obtained here are in agreement with our previous results that suggest that this tissue plays an important role in providing optimal conditions for developing embryos. Therefore, the importance of the myometrium as an active embryo signal-responsive tissue during early pregnancy cannot be underestimated.Entities:
Mesh:
Year: 2014 PMID: 25240502 PMCID: PMC4233113 DOI: 10.1007/s10142-014-0401-4
Source DB: PubMed Journal: Funct Integr Genomics ISSN: 1438-793X Impact factor: 3.410
Primers used for the validation of microarray results
| Gene symbol (official) | Primers sequences | Target sequence accession number |
|---|---|---|
|
| Forward: 5′-TTTGATGCTGACGAACTCC-3′ Reverse: 5′-CCAGATGTGTCTGAGGTAATG-3′ | NM_001163998.1 |
|
| Forward: 5′-GACGGCTCTGTCATTGATTAT-3′ Reverse: 5′-GACGGCTCTGTCATTGATTAT-3′ | NM_001005726.1 |
|
| Forward: 5′-TCCCTACTTGGAGTCATCAG-3′ Reverse: 5′-GTCTGGTGGCAAAGGTTTA-3′ | NM_001243634.1 |
|
| Forward: 5′-ACCTCTGGAAGTCCACTC-3′ Reverse: 5′-CTCCGTTTGTCCTTGGTAAT-3′ | NM_001195342.1 |
|
| Forward: 5′-TGGTGAGCGGCCAGGTT-3′ Reverse: 5′-TGGCCACTACGTACATCTTGATG-3′ | NM_001038631.1 |
|
| Forward: 5′-CGAACTCTCAACCTCAAGTG-3′ Reverse: 5′-GGTCGTGATGCTGTTGTAG-3′ | NM_213958.1 |
The list of significantly enriched GO terms
| Gene list | GO category | GO term | Description |
| Gene count/percent |
|---|---|---|---|---|---|
| Upregulated in the myometrium from pregnant gilts (days 15 to 16) | GOTERM_BP_FAT | GO:0002474 | Antigen processing and presentation of peptide antigen via MHC class I | 1,99E-02 | 3/2.29 |
| GOTERM_BP_FAT | GO:0048002 | Antigen processing and presentation of peptide antigen | 1,99E-02 | 3/2.29 | |
| GOTERM_CC_FAT | GO:0048770 | Pigment granule | 1,45E-02 | 5/3.81 | |
| GOTERM_CC_FAT | GO:0042470 | Melanosome | 1,45E-02 | 5/3.81 | |
| GOTERM_CC_FAT | GO:0044421 | Extracellular region part | 6,54E-02 | 11/8.39 | |
| GOTERM_CC_FAT | GO:0031410 | Cytoplasmic vesicle | 6,87E-02 | 6/4.58 | |
| GOTERM_CC_FAT | GO:0031982 | Vesicle | 6,87E-02 | 6/4.58 | |
| GOTERM_MF_FAT | GO:0043169 | Cation binding | 2,58E-02 | 28/21.3 | |
| GOTERM_MF_FAT | GO:0043167 | Ion binding | 2,81E-02 | 28/21.3 | |
| GOTERM_MF_FAT | GO:0046872 | Metal ion binding | 6,32E-02 | 26/19.8 | |
| Downregulated in the myometrium from pregnant gilts (days 15 to 16) | GOTERM_BP_FAT | GO:0007218 | Neuropeptide signaling pathway | 5,81E-03 | 7/5.51 |
| GOTERM_CC_FAT | GO:0005840 | Ribosome | 4,09E-03 | 7/5.51 | |
| GOTERM_CC_FAT | GO:0030529 | Ribonucleoprotein complex | 9,06E-03 | 7/5.51 | |
| GOTERM_MF_FAT | GO:0005198 | Structural molecule activity | 5,16E-03 | 10/7.87 | |
| GOTERM_MF_FAT | GO:0003735 | Structural constituent of ribosome | 5,90E-03 | 7/5.51 | |
| GOTERM_MF_FAT | GO:0003707 | Steroid hormone receptor activity | 5,71E-02 | 4/3.14 | |
| GOTERM_MF_FAT | GO:0004879 | Ligand-dependent nuclear receptor activity | 6,41E-02 | 4/3.14 |
GO gene ontology
Fig 1Gene interaction network constructed with GeneMania for 18 highly altered genes. The colour of the line that connects the genes depicts the type of interaction (see legend). The solid red circles indicate upregulated genes, while the dashed circles indicate downregulated gene
Fig 2Venn diagrams representing genes commonly differentially expressed in the myometrium (Myo; this study) and the endometrium (Endo; Franczak et al. 2013b) from days 15 to 16 of pregnancy. a Comparison of all differentially expressed genes; b comparison of upregulated genes; c comparison of downregulated genes
Results of selected gene expression validation with real-time PCR
| Gene symbol | Microarray fold-change | Real-time PCR fold change | Regulation during pregnancy |
|---|---|---|---|
|
| 1.53 | 2.12 | Up |
|
| 1.51 | 1.82 | Up |
|
| 1.22 | 1.11 | Up |
|
| 2.54 | 2.16 | Up |
|
| 1.22 | 1.73 | Up |
|
| −1.22 | −1.24 | Down |