Literature DB >> 25240283

Hotspot activating PRKD1 somatic mutations in polymorphous low-grade adenocarcinomas of the salivary glands.

Ilan Weinreb1, Salvatore Piscuoglio2, Luciano G Martelotto2, Daryl Waggott3, Charlotte K Y Ng2, Bayardo Perez-Ordonez1, Nicholas J Harding4, Javier Alfaro5, Kenneth C Chu4, Agnes Viale6, Nicola Fusco7, Arnaud da Cruz Paula8, Caterina Marchio2, Rita A Sakr9, Raymond Lim2, Lester D R Thompson10, Simion I Chiosea11, Raja R Seethala11, Alena Skalova12, Edward B Stelow13, Isabel Fonseca14, Adel Assaad15, Christine How16, Jianxin Wang4, Richard de Borja4, Michelle Chan-Seng-Yue4, Christopher J Howlett17, Anthony C Nichols17, Y Hannah Wen2, Nora Katabi2, Nicholas Buchner18, Laura Mullen18, Thomas Kislinger19, Bradly G Wouters19, Fei-Fei Liu20, Larry Norton21, John D McPherson22, Brian P Rubin23, Blaise A Clarke1, Britta Weigelt2, Paul C Boutros24, Jorge S Reis-Filho25.   

Abstract

Polymorphous low-grade adenocarcinoma (PLGA) is the second most frequent type of malignant tumor of the minor salivary glands. We identified PRKD1 hotspot mutations encoding p.Glu710Asp in 72.9% of PLGAs but not in other salivary gland tumors. Functional studies demonstrated that this kinase-activating alteration likely constitutes a driver of PLGA.

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Year:  2014        PMID: 25240283     DOI: 10.1038/ng.3096

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  54 in total

1.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

2.  QMEAN: A comprehensive scoring function for model quality assessment.

Authors:  Pascal Benkert; Silvio C E Tosatto; Dietmar Schomburg
Journal:  Proteins       Date:  2008-04

3.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

4.  Epidermal growth factor receptor gene and protein and gefitinib sensitivity in non-small-cell lung cancer.

Authors:  Federico Cappuzzo; Fred R Hirsch; Elisa Rossi; Stefania Bartolini; Giovanni L Ceresoli; Lynne Bemis; Jerry Haney; Samir Witta; Kathleen Danenberg; Irene Domenichini; Vienna Ludovini; Elisabetta Magrini; Vanesa Gregorc; Claudio Doglioni; Angelo Sidoni; Maurizio Tonato; Wilbur A Franklin; Lucio Crino; Paul A Bunn; Marileila Varella-Garcia
Journal:  J Natl Cancer Inst       Date:  2005-05-04       Impact factor: 13.506

5.  β-Catenin pathway activation in breast cancer is associated with triple-negative phenotype but not with CTNNB1 mutation.

Authors:  Felipe C Geyer; Magali Lacroix-Triki; Kay Savage; Monica Arnedos; Maryou B Lambros; Alan MacKay; Rachael Natrajan; Jorge S Reis-Filho
Journal:  Mod Pathol       Date:  2010-11-12       Impact factor: 7.842

6.  QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information.

Authors:  Pascal Benkert; Torsten Schwede; Silvio Ce Tosatto
Journal:  BMC Struct Biol       Date:  2009-05-20

7.  Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models.

Authors:  Hashem A Shihab; Julian Gough; David N Cooper; Peter D Stenson; Gary L A Barker; Keith J Edwards; Ian N M Day; Tom R Gaunt
Journal:  Hum Mutat       Date:  2012-11-02       Impact factor: 4.878

Review 8.  Revisiting the technical validation of tumour biomarker assays: how to open a Pandora's box.

Authors:  Caterina Marchiò; Mitch Dowsett; Jorge S Reis-Filho
Journal:  BMC Med       Date:  2011-04-19       Impact factor: 8.775

9.  The SWISS-MODEL Repository and associated resources.

Authors:  Florian Kiefer; Konstantin Arnold; Michael Künzli; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2008-10-18       Impact factor: 16.971

10.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

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  75 in total

1.  Absence of PRKD1 Mutation, a Salivary Tumor-Specific Mutation, in Solid Tumors and Leukemias.

Authors:  Yun Sol Jo; Min Sung Kim; Nam Jin Yoo; Sug Hyung Lee
Journal:  Pathol Oncol Res       Date:  2015-10-31       Impact factor: 3.201

2.  Protein kinase D1 (PKD1) phosphorylation on Ser203 by type I p21-activated kinase (PAK) regulates PKD1 localization.

Authors:  Jen-Kuan Chang; Yang Ni; Liang Han; James Sinnett-Smith; Rodrigo Jacamo; Osvaldo Rey; Steven H Young; Enrique Rozengurt
Journal:  J Biol Chem       Date:  2017-04-13       Impact factor: 5.157

3.  The Landscape of Somatic Genetic Alterations in Metaplastic Breast Carcinomas.

Authors:  Charlotte K Y Ng; Salvatore Piscuoglio; Felipe C Geyer; Kathleen A Burke; Fresia Pareja; Carey A Eberle; Raymond S Lim; Rachael Natrajan; Nadeem Riaz; Odette Mariani; Larry Norton; Anne Vincent-Salomon; Y Hannah Wen; Britta Weigelt; Jorge S Reis-Filho
Journal:  Clin Cancer Res       Date:  2017-02-02       Impact factor: 12.531

4.  Comprehensive Molecular Characterization of Salivary Duct Carcinoma Reveals Actionable Targets and Similarity to Apocrine Breast Cancer.

Authors:  Martin G Dalin; Alexis Desrichard; Nora Katabi; Vladimir Makarov; Logan A Walsh; Ken-Wing Lee; Qingguo Wang; Joshua Armenia; Lyndsay West; Snjezana Dogan; Lu Wang; Deepa Ramaswami; Alan L Ho; Ian Ganly; David B Solit; Michael F Berger; Nikolaus D Schultz; Jorge S Reis-Filho; Timothy A Chan; Luc G T Morris
Journal:  Clin Cancer Res       Date:  2016-04-21       Impact factor: 12.531

Review 5.  Challenges in Minor Salivary Gland Biopsies: A Practical Approach to Problematic Histologic Patterns.

Authors:  Lisa M Rooper
Journal:  Head Neck Pathol       Date:  2019-03-18

6.  Pleomorphic adenomas and mucoepidermoid carcinomas of the breast are underpinned by fusion genes.

Authors:  Fresia Pareja; Arnaud Da Cruz Paula; Rodrigo Gularte-Mérida; Mahsa Vahdatinia; Anqi Li; Felipe C Geyer; Edaise M da Silva; Gouri Nanjangud; Hannah Y Wen; Zsuzsanna Varga; Edi Brogi; Emad A Rakha; Britta Weigelt; Jorge S Reis-Filho
Journal:  NPJ Breast Cancer       Date:  2020-06-05

7.  Myxoid fibroadenomas differ from conventional fibroadenomas: a hypothesis-generating study.

Authors:  John R Lozada; Kathleen A Burke; Aoife Maguire; Fresia Pareja; Raymond S Lim; Jisun Kim; Rodrigo Gularte-Merida; Melissa P Murray; Edi Brogi; Britta Weigelt; Jorge S Reis-Filho; Felipe C Geyer
Journal:  Histopathology       Date:  2017-07-05       Impact factor: 5.087

Review 8.  Basaloid/blue salivary gland tumors.

Authors:  Raja R Seethala
Journal:  Mod Pathol       Date:  2017-01       Impact factor: 7.842

Review 9.  Newly described salivary gland tumors.

Authors:  Alena Skalova; Michal Michal; Roderick Hw Simpson
Journal:  Mod Pathol       Date:  2017-01       Impact factor: 7.842

10.  Predictors of Outcome in the Phenotypic Spectrum of Polymorphous Low-grade Adenocarcinoma (PLGA) and Cribriform Adenocarcinoma of Salivary Gland (CASG): A Retrospective Study of 69 Patients.

Authors:  Bin Xu; Amandeep Aneja; Ronald Ghossein; Nora Katabi
Journal:  Am J Surg Pathol       Date:  2016-11       Impact factor: 6.394

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