Literature DB >> 25236843

Development of MRI-based atlases of non-human brains.

Jeremy F P Ullmann1, Andrew L Janke, David Reutens, Charles Watson.   

Abstract

Brain atlases are a fundamental resource for neuroscience research. In the past few decades they have undergone a transition from traditional printed histological atlases to digital atlases made up of multiple data sets from multiple modalities, and atlases based on magnetic resonance imaging (MRI) have become widespread. Here we discuss the methods involved in making an MRI brain atlas, including registration of multiple data sets into a model, ontological classification, segmentation of a minimum deformation model, dissemination strategies, and applications of these atlases. Finally, we discuss possible future directions in the development of brain atlases.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  MRI; brain atlas; model; ontology; registration; segmentation

Mesh:

Year:  2014        PMID: 25236843     DOI: 10.1002/cne.23678

Source DB:  PubMed          Journal:  J Comp Neurol        ISSN: 0021-9967            Impact factor:   3.215


  6 in total

1.  Stress-inducible phosphoprotein 1 (HOP/STI1/STIP1) regulates the accumulation and toxicity of α-synuclein in vivo.

Authors:  Rachel E Lackie; Aline S de Miranda; Mei Peng Lim; Vladislav Novikov; Nimrod Madrer; Nadun C Karunatilleke; Benjamin S Rutledge; Stephanie Tullo; Anne Brickenden; Matthew E R Maitland; David Greenberg; Daniel Gallino; Wen Luo; Anoosha Attaran; Irina Shlaifer; Esther Del Cid Pellitero; Caroline Schild-Poulter; Thomas M Durcan; Edward A Fon; Martin Duennwald; Flavio H Beraldo; M Mallar Chakravarty; Timothy J Bussey; Lisa M Saksida; Hermona Soreq; Wing-Yiu Choy; Vania F Prado; Marco A M Prado
Journal:  Acta Neuropathol       Date:  2022-09-19       Impact factor: 15.887

2.  The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease.

Authors:  Alexandra Badea; Lauren Kane; Robert J Anderson; Yi Qi; Mark Foster; Gary P Cofer; Neil Medvitz; Anne F Buckley; Andreas K Badea; William C Wetsel; Carol A Colton
Journal:  Neuroimage       Date:  2016-08-10       Impact factor: 6.556

3.  Germline Chd8 haploinsufficiency alters brain development in mouse.

Authors:  Andrea L Gompers; Linda Su-Feher; Jacob Ellegood; Nycole A Copping; M Asrafuzzaman Riyadh; Tyler W Stradleigh; Michael C Pride; Melanie D Schaffler; A Ayanna Wade; Rinaldo Catta-Preta; Iva Zdilar; Shreya Louis; Gaurav Kaushik; Brandon J Mannion; Ingrid Plajzer-Frick; Veena Afzal; Axel Visel; Len A Pennacchio; Diane E Dickel; Jason P Lerch; Jacqueline N Crawley; Konstantinos S Zarbalis; Jill L Silverman; Alex S Nord
Journal:  Nat Neurosci       Date:  2017-06-26       Impact factor: 24.884

4.  Possum-A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections.

Authors:  Piotr Majka; Daniel K Wójcik
Journal:  Neuroinformatics       Date:  2016-07

5.  Volumes of brain structures in captive wild-type and laboratory rats: 7T magnetic resonance in vivo automatic atlas-based study.

Authors:  Marlena Welniak-Kaminska; Michal Fiedorowicz; Jaroslaw Orzel; Piotr Bogorodzki; Klaudia Modlinska; Rafal Stryjek; Anna Chrzanowska; Wojciech Pisula; Pawel Grieb
Journal:  PLoS One       Date:  2019-04-11       Impact factor: 3.240

6.  Equine Stereotaxtic Population Average Brain Atlas With Neuroanatomic Correlation.

Authors:  Philippa J Johnson; Valentin Janvier; Wen-Ming Luh; Marnie FitzMaurice; Teresa Southard; Erica F Barry
Journal:  Front Neuroanat       Date:  2019-10-03       Impact factor: 3.856

  6 in total

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