Literature DB >> 25232503

Multiplex amplification refractory mutation system (MARMS) for the detection of β-globin gene mutations among the transfusion-dependent β-thalassemia Malay patients in Kelantan, Northeast of Peninsular Malaysia.

Sarifah Hanafi1, Rosline Hassan2, Rosnah Bahar2, Wan Zaidah Abdullah2, Muhammad Farid Johan2, Noor Diana Rashid1, Nurul Fatihah Azman1, Ariffin Nasir1, Syahzuwan Hassan3, Rahimah Ahmad3, Azizah Othman1, Mohd Ismail Ibrahim4, Surianti Sukeri4, Sarina Sulong5, Surini Yusoff1, Nor Sarwany Mohamad1, Adil Hussein6, Rozita Hassan7, Narazah Yusoff8, Badrul Hisyam Yahaya8, Endom Ismail9, Nik Khairuddin Nik Yussof10, Sinari Salleh11, Bin Alwi Zilfalil1.   

Abstract

The aim of this study was to adapt MARMS with some modifications to detect beta mutation in our cohort of thalassemia patients. We focused only on transfusion-dependent thalassemia Malay patients, the predominant ethnic group (95%) in the Kelantanese population. Eight mutations were identified in 46 out of 48 (95.83%) beta thalassemia alleles. Most of the patients (54.2%) were compound heterozygous with co-inheritance Cd 26 (G>A). The frequencies of spectrum beta chain mutation among these patients are presented in Table 2. Among the transfusion dependent beta thalassemia Malay patients studied, 26 patients were found to be compound heterozygous and the main alleles were Cd 26 (G>A). Compound heterozygous mutation of Cd 26 (G>A) and IVS 1-5 (G>C) were 12 (46.2%), Cd 26 (G>A) and Cd 41/42 (TTCT) were 9 (34.6%), Cd 26 (G>A) and IVS 1-1 (G>C) were 2 (7.7%) respectively. Meanwhile the minority were made of a single compound heterozygous of Cd 26 (G>A) and Cd 71/72, Cd 26 (>A) and Cd 17 (A>T), Cd 26 (G>A) and -28 (G>A) respectively. Twenty out of forty six patients were shown to have homozygous of IVS 1-5 (G>C) were 2 (10.0%), Cd 26 (G>A) were 15 (75.0%), Cd 19 (A>G) were 1 (5.0%), and IVS 1-1 (G>T) were 2 (10.0%). The beta chain mutations among the Kelantanese Malays followed closely the distribution of beta chain mutations among the Thais and the Malays of the Southern Thailand. The G-C transition at position 5 of the IVS 1-5 mutation was predominant among the Malay patients. In conclusion, this method has successfully identified the mutation spectrum in our cohort of transfusion-dependent beta thalassemia patients, and this method is equally effective in screening for mutation among thalassemia patients.

Entities:  

Keywords:  MARMS-PCR; Malay; mutation; thalassemia; β-globin gene

Year:  2014        PMID: 25232503      PMCID: PMC4165115     

Source DB:  PubMed          Journal:  Am J Blood Res        ISSN: 2160-1992


  18 in total

1.  A wider molecular spectrum of beta-thalassaemia in Myanmar.

Authors:  Ne Win; Teruo Harano; Keiko Harano; Thein-Thein Myint; Rai Mra; Shigeru Okada; Kunio Shimono; Aye-Aye Myint
Journal:  Br J Haematol       Date:  2002-06       Impact factor: 6.998

Review 2.  Antenatal diagnosis.

Authors:  J M Old; C A Ludlam
Journal:  Baillieres Clin Haematol       Date:  1991-04

3.  Characterisation of beta-globin gene mutations in Malaysian children: a strategy for the control of beta-thalassaemia in a developing country.

Authors:  Meow-Keong Thong; J A M A Tan; K L Tan; S F Yap
Journal:  J Trop Pediatr       Date:  2005-06-20       Impact factor: 1.165

4.  Trading genes along the silk road: mtDNA sequences and the origin of central Asian populations.

Authors:  D Comas; F Calafell; E Mateu; A Pérez-Lezaun; E Bosch; R Martínez-Arias; J Clarimon; F Facchini; G Fiori; D Luiselli; D Pettener; J Bertranpetit
Journal:  Am J Hum Genet       Date:  1998-12       Impact factor: 11.025

5.  Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS).

Authors:  C R Newton; A Graham; L E Heptinstall; S J Powell; C Summers; N Kalsheker; J C Smith; A F Markham
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

Review 6.  Molecular study and prenatal diagnosis of alpha- and beta-thalassemias in Chinese.

Authors:  T M Ko; X Xu
Journal:  J Formos Med Assoc       Date:  1998-01       Impact factor: 3.282

7.  Molecular Basis of beta-Thalassemia in Indonesia: Application to Prenatal Diagnosis.

Authors: 
Journal:  Mol Diagn       Date:  1998-03

8.  Types of thalassemia among patients attending a large university clinic in Kuala Lumpur, Malaysia.

Authors:  E George; H J Li; Y J Fei; A L Reese; E Baysal; B Cepreganova; J B Wilson; L H Gu; J F Nechtman; T A Stoming
Journal:  Hemoglobin       Date:  1992       Impact factor: 0.849

9.  Detection of the most common mutations causing beta-thalassemia in Mediterraneans using a multiplex amplification refractory mutation system (MARMS).

Authors:  P Fortina; G Dotti; R Conant; G Monokian; T Parrella; W Hitchcock; E Rappaport; E Schwartz; S Surrey
Journal:  PCR Methods Appl       Date:  1992-11

10.  Population genetic structure of peninsular Malaysia Malay sub-ethnic groups.

Authors:  Wan Isa Hatin; Ab Rajab Nur-Shafawati; Mohd-Khairi Zahri; Shuhua Xu; Li Jin; Soon-Guan Tan; Mohammed Rizman-Idid; Bin Alwi Zilfalil
Journal:  PLoS One       Date:  2011-04-05       Impact factor: 3.240

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  4 in total

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Authors:  Hayat Alafari; Faris Q Alenzi
Journal:  Saudi J Biol Sci       Date:  2020-09-04       Impact factor: 4.219

2.  Evaluation of amplification refractory mutation system (ARMS) technique for quick and accurate prenatal gene diagnosis of CHM variant in choroideremia.

Authors:  Lisha Yang; Iqra Ijaz; Jingliang Cheng; Chunli Wei; Xiaojun Tan; Md Asaduzzaman Khan; Xiaodong Fu; Junjiang Fu
Journal:  Appl Clin Genet       Date:  2017-12-19

3.  Observational study on the current status of thalassaemia in Malaysia: a report from the Malaysian Thalassaemia Registry.

Authors:  Hishamshah Mohd Ibrahim; Zulaiha Muda; Ida Shahnaz Othman; Mohamed Najib Mohamed Unni; Kok Hoi Teh; Asohan Thevarajah; Kogilavani Gunasagaran; Gek Bee Ong; Seoh Leng Yeoh; Aisyah Muhammad Rivai; Che Hadibiah Che Mohd Razali; Nazzlin Dizana Din; Zarina Abdul Latiff; Rahman Jamal; Norsarwany Mohamad; Hany Mohd Ariffin; Hamidah Alias
Journal:  BMJ Open       Date:  2020-06-29       Impact factor: 2.692

4.  Direct sequencing of β-globin gene reveals a rare combination of two exonic and two intronic variants in a β-thalassemia major patient: a case report.

Authors:  Waseem Chauhan; Rafat Fatma; Zeeba Zaka-Ur-Rab; Mohammad Afzal
Journal:  J Med Case Rep       Date:  2022-10-09
  4 in total

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