Literature DB >> 25228134

Perceptual clustering for automatic hotspot detection from Ki-67-stained neuroendocrine tumour images.

M Khalid Khan Niazi1, Martha M Yearsley, Xiaoping Zhou, Wendy L Frankel, Metin N Gurcan.   

Abstract

Hotspot detection plays a crucial role in grading of neuroendocrine tumours of the digestive system. Hotspots are often detected manually from Ki-67-stained images, a practice which is tedious, irreproducible and error prone. We report a new method to segment Ki-67-positive nuclei from Ki-67-stained slides of neuroendocrine tumours. The method combines minimal graph cuts along with the multistate difference of Gaussians to detect the individual cells from images of Ki-67-stained slides. It, then, automatically defines the composite function, which is used to determine hotspots in neuroendocrine tumour slide images. We combine modified particle swarm optimization with message passing clustering to mimic the thought process of the pathologist during hotspot detection in neuroendocrine tumour slide images. The proposed method was tested on 55 images of size 10 × 5 K and resulted in an accuracy of 94.60%. The developed methodology can also be part of the workflow for other diseases such as breast cancer and glioblastomas.
© 2014 The Authors Journal of Microscopy © 2014 Royal Microscopical Society.

Entities:  

Keywords:  Clustering; detection; hotspot; nuclei; particle swarm optimization; segmentation

Mesh:

Substances:

Year:  2014        PMID: 25228134     DOI: 10.1111/jmi.12176

Source DB:  PubMed          Journal:  J Microsc        ISSN: 0022-2720            Impact factor:   1.758


  5 in total

1.  Advancing Clinicopathologic Diagnosis of High-risk Neuroblastoma Using Computerized Image Analysis and Proteomic Profiling.

Authors:  M Khalid Khan Niazi; Jonathan H Chung; Katherine J Heaton-Johnson; Daniel Martinez; Raquel Castellanos; Meredith S Irwin; Stephen R Master; Bruce R Pawel; Metin N Gurcan; Daniel A Weiser
Journal:  Pediatr Dev Pathol       Date:  2017-04-18

2.  An Advanced Deep Learning Approach for Ki-67 Stained Hotspot Detection and Proliferation Rate Scoring for Prognostic Evaluation of Breast Cancer.

Authors:  Monjoy Saha; Chandan Chakraborty; Indu Arun; Rosina Ahmed; Sanjoy Chatterjee
Journal:  Sci Rep       Date:  2017-06-12       Impact factor: 4.379

3.  Automated Computational Detection, Quantitation, and Mapping of Mitosis in Whole-Slide Images for Clinically Actionable Surgical Pathology Decision Support.

Authors:  Munish Puri; Shelley B Hoover; Stephen M Hewitt; Bih-Rong Wei; Hibret Amare Adissu; Charles H C Halsey; Jessica Beck; Charles Bradley; Sarah D Cramer; Amy C Durham; D Glen Esplin; Chad Frank; L Tiffany Lyle; Lawrence D McGill; Melissa D Sánchez; Paula A Schaffer; Ryan P Traslavina; Elizabeth Buza; Howard H Yang; Maxwell P Lee; Jennifer E Dwyer; R Mark Simpson
Journal:  J Pathol Inform       Date:  2019-02-07

Review 4.  Ki-67 assessment of pancreatic neuroendocrine neoplasms: Systematic review and meta-analysis of manual vs. digital pathology scoring.

Authors:  Claudio Luchini; Liron Pantanowitz; Volkan Adsay; Sylvia L Asa; Pietro Antonini; Ilaria Girolami; Nicola Veronese; Alessia Nottegar; Sara Cingarlini; Luca Landoni; Lodewijk A Brosens; Anna V Verschuur; Paola Mattiolo; Antonio Pea; Andrea Mafficini; Michele Milella; Muhammad K Niazi; Metin N Gurcan; Albino Eccher; Ian A Cree; Aldo Scarpa
Journal:  Mod Pathol       Date:  2022-03-05       Impact factor: 8.209

5.  Identifying tumor in pancreatic neuroendocrine neoplasms from Ki67 images using transfer learning.

Authors:  Muhammad Khalid Khan Niazi; Thomas Erol Tavolara; Vidya Arole; Douglas J Hartman; Liron Pantanowitz; Metin N Gurcan
Journal:  PLoS One       Date:  2018-04-12       Impact factor: 3.240

  5 in total

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