Literature DB >> 25223304

Machine learning for Big Data analytics in plants.

Chuang Ma1, Hao Helen Zhang2, Xiangfeng Wang3.   

Abstract

Rapid advances in high-throughput genomic technology have enabled biology to enter the era of 'Big Data' (large datasets). The plant science community not only needs to build its own Big-Data-compatible parallel computing and data management infrastructures, but also to seek novel analytical paradigms to extract information from the overwhelming amounts of data. Machine learning offers promising computational and analytical solutions for the integrative analysis of large, heterogeneous and unstructured datasets on the Big-Data scale, and is gradually gaining popularity in biology. This review introduces the basic concepts and procedures of machine-learning applications and envisages how machine learning could interface with Big Data technology to facilitate basic research and biotechnology in the plant sciences.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Keywords:  Big Data; large-scale datasets; machine learning; plants

Mesh:

Year:  2014        PMID: 25223304     DOI: 10.1016/j.tplants.2014.08.004

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  31 in total

1.  Putative cis-Regulatory Elements Predict Iron Deficiency Responses in Arabidopsis Roots.

Authors:  Birte Schwarz; Christina B Azodi; Shin-Han Shiu; Petra Bauer
Journal:  Plant Physiol       Date:  2020-01-14       Impact factor: 8.340

Review 2.  Machine learning: its challenges and opportunities in plant system biology.

Authors:  Mohsen Hesami; Milad Alizadeh; Andrew Maxwell Phineas Jones; Davoud Torkamaneh
Journal:  Appl Microbiol Biotechnol       Date:  2022-05-16       Impact factor: 4.813

3.  Finding and Characterizing Repeats in Plant Genomes.

Authors:  Jacques Nicolas; Sébastien Tempel; Anna-Sophie Fiston-Lavier; Emira Cherif
Journal:  Methods Mol Biol       Date:  2022

Review 4.  Advancing crop genomics from lab to field.

Authors:  Michael D Purugganan; Scott A Jackson
Journal:  Nat Genet       Date:  2021-05-06       Impact factor: 38.330

5.  Analysis of environmental stress factors using an artificial growth system and plant fitness optimization.

Authors:  Meonghun Lee; Hyun Yoe
Journal:  Biomed Res Int       Date:  2015-03-22       Impact factor: 3.411

6.  Phenotyping: Using Machine Learning for Improved Pairwise Genotype Classification Based on Root Traits.

Authors:  Jiangsan Zhao; Gernot Bodner; Boris Rewald
Journal:  Front Plant Sci       Date:  2016-12-06       Impact factor: 5.753

Review 7.  Potential Uses of Wild Germplasms of Grain Legumes for Crop Improvement.

Authors:  Nacira Muñoz; Ailin Liu; Leo Kan; Man-Wah Li; Hon-Ming Lam
Journal:  Int J Mol Sci       Date:  2017-02-04       Impact factor: 5.923

8.  Meta-analysis of the effect of expression of MYB transcription factor genes on abiotic stress.

Authors:  Zhaolan Han; Yuanchun Ma; Xiaowen Shang; Lingxia Shao; Ya Wang; Xujun Zhu; Wanping Fang
Journal:  PeerJ       Date:  2021-06-08       Impact factor: 2.984

Review 9.  Advances in Cereal Crop Genomics for Resilience under Climate Change.

Authors:  Tinashe Zenda; Songtao Liu; Anyi Dong; Huijun Duan
Journal:  Life (Basel)       Date:  2021-05-29

Review 10.  Data Science and Analytics: An Overview from Data-Driven Smart Computing, Decision-Making and Applications Perspective.

Authors:  Iqbal H Sarker
Journal:  SN Comput Sci       Date:  2021-07-12
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