Literature DB >> 25221418

A FAST ITERATIVE METHOD FOR SOLVING THE EIKONAL EQUATION ON TETRAHEDRAL DOMAINS.

Zhisong Fu1, Robert M Kirby1, Ross T Whitaker1.   

Abstract

Generating numerical solutions to the eikonal equation and its many variations has a broad range of applications in both the natural and computational sciences. Efficient solvers on cutting-edge, parallel architectures require new algorithms that may not be theoretically optimal, but that are designed to allow asynchronous solution updates and have limited memory access patterns. This paper presents a parallel algorithm for solving the eikonal equation on fully unstructured tetrahedral meshes. The method is appropriate for the type of fine-grained parallelism found on modern massively-SIMD architectures such as graphics processors and takes into account the particular constraints and capabilities of these computing platforms. This work builds on previous work for solving these equations on triangle meshes; in this paper we adapt and extend previous two-dimensional strategies to accommodate three-dimensional, unstructured, tetrahedralized domains. These new developments include a local update strategy with data compaction for tetrahedral meshes that provides solutions on both serial and parallel architectures, with a generalization to inhomogeneous, anisotropic speed functions. We also propose two new update schemes, specialized to mitigate the natural data increase observed when moving to three dimensions, and the data structures necessary for efficiently mapping data to parallel SIMD processors in a way that maintains computational density. Finally, we present descriptions of the implementations for a single CPU, as well as multicore CPUs with shared memory and SIMD architectures, with comparative results against state-of-the-art eikonal solvers.

Entities:  

Keywords:  Hamilton–Jacobi equation; eikonal equation; graphics processing unit; parallel algorithm; shared memory multiple-processor computer system; tetrahedral mesh

Year:  2013        PMID: 25221418      PMCID: PMC4162315          DOI: 10.1137/120881956

Source DB:  PubMed          Journal:  SIAM J Sci Comput        ISSN: 1064-8275            Impact factor:   2.373


  6 in total

1.  A fast marching level set method for monotonically advancing fronts.

Authors:  J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

2.  A FAST ITERATIVE METHOD FOR SOLVING THE EIKONAL EQUATION ON TRIANGULATED SURFACES.

Authors:  Zhisong Fu; Won-Ki Jeong; Yongsheng Pan; Robert M Kirby; Ross T Whitaker
Journal:  SIAM J Sci Comput       Date:  2011-10-06       Impact factor: 2.373

3.  Interactive visualization of volumetric white matter connectivity in DT-MRI using a parallel-hardware Hamilton-Jacobi solver.

Authors:  Won-Ki Jeong; P Thomas Fletcher; Ran Tao; Ross Whitaker
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

4.  An eikonal-curvature equation for action potential propagation in myocardium.

Authors:  J P Keener
Journal:  J Math Biol       Date:  1991       Impact factor: 2.259

5.  Computing geodesic paths on manifolds.

Authors:  R Kimmel; J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

6.  Spreading of excitation in 3-D models of the anisotropic cardiac tissue. I. Validation of the eikonal model.

Authors:  P C Franzone; L Guerri
Journal:  Math Biosci       Date:  1993-02       Impact factor: 2.144

  6 in total
  5 in total

1.  An Inverse Eikonal Method for Identifying Ventricular Activation Sequences from Epicardial Activation Maps.

Authors:  Thomas Grandits; Karli Gillette; Aurel Neic; Jason Bayer; Edward Vigmond; Thomas Pock; Gernot Plank
Journal:  J Comput Phys       Date:  2020-07-03       Impact factor: 3.553

2.  Efficient computation of electrograms and ECGs in human whole heart simulations using a reaction-eikonal model.

Authors:  Aurel Neic; Fernando O Campos; Anton J Prassl; Steven A Niederer; Martin J Bishop; Edward J Vigmond; Gernot Plank
Journal:  J Comput Phys       Date:  2017-10-01       Impact factor: 3.553

3.  A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations.

Authors:  Marina Strocchi; Christoph M Augustin; Matthias A F Gsell; Elias Karabelas; Aurel Neic; Karli Gillette; Orod Razeghi; Anton J Prassl; Edward J Vigmond; Jonathan M Behar; Justin Gould; Baldeep Sidhu; Christopher A Rinaldi; Martin J Bishop; Gernot Plank; Steven A Niederer
Journal:  PLoS One       Date:  2020-06-26       Impact factor: 3.240

4.  The impact of wall thickness and curvature on wall stress in patient-specific electromechanical models of the left atrium.

Authors:  Christoph M Augustin; Thomas E Fastl; Aurel Neic; Chiara Bellini; John Whitaker; Ronak Rajani; Mark D O'Neill; Martin J Bishop; Gernot Plank; Steven A Niederer
Journal:  Biomech Model Mechanobiol       Date:  2019-12-04

5.  Fast Characterization of Inducible Regions of Atrial Fibrillation Models With Multi-Fidelity Gaussian Process Classification.

Authors:  Lia Gander; Simone Pezzuto; Ali Gharaviri; Rolf Krause; Paris Perdikaris; Francisco Sahli Costabal
Journal:  Front Physiol       Date:  2022-03-07       Impact factor: 4.566

  5 in total

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