Literature DB >> 25221355

TWO APPLICATIONS OF PERMUTATION TESTS IN BIOSTASTICS.

Luis León-Novelo1, Kaisa M Kemppainen2, Alexandria Ardissone3, Austin Davis-Richardson4, Jennie Fagen5, Kelsey Gano6, Eric W Triplett7.   

Abstract

We show two examples of how we answer biological questions by converting them into statistical hypothesis testing problems. We consider gene abundance data, and apply permutation tests. Though these tests are simple, they allow us to test biologically relevant hypotheses. Here we present the analysis of data rising from two studies on Type 1 Diabetes. In the first study [3] are interested in comparing the gut bacterial biodiversity in children at risk and not at risk of developing diabetes. In the second study, [4] compare the gut bacterial biodiversity of children in six different sites in USA and Europe. The statistical analyses presented here are parts of the "statistical methods" in two papers mentioned above. Here we offer a detailed explanation of the "Statistical Methods" addressed to readers with a statistics background.

Entities:  

Keywords:  Shannon diversity index; analysis of covariance; permutation test; type 1 diabetes; unifrac distance

Year:  2013        PMID: 25221355      PMCID: PMC4159102     

Source DB:  PubMed          Journal:  Bol Soc Mat Mex        ISSN: 0037-8615


  7 in total

1.  Population-based genetic screening for the estimation of Type 1 diabetes mellitus risk in Finland: selective genotyping of markers in the HLA-DQB1, HLA-DQA1 and HLA-DRB1 loci.

Authors:  S Nejentsev; M Sjöroos; T Soukka; M Knip; O Simell; T Lövgren; J Ilonen
Journal:  Diabet Med       Date:  1999-12       Impact factor: 4.359

Review 2.  Phylogenetic approaches for describing and comparing the diversity of microbial communities.

Authors:  Andrew P Martin
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

3.  Feasibility of genetic and immunological prediction of type I diabetes in a population-based birth cohort.

Authors:  A Kupila; P Muona; T Simell; P Arvilommi; H Savolainen; A M Hämäläinen; S Korhonen; T Kimpimäki; M Sjöroos; J Ilonen; M Knip; O Simell
Journal:  Diabetologia       Date:  2001-03       Impact factor: 10.122

4.  Toward defining the autoimmune microbiome for type 1 diabetes.

Authors:  Adriana Giongo; Kelsey A Gano; David B Crabb; Nabanita Mukherjee; Luis L Novelo; George Casella; Jennifer C Drew; Jorma Ilonen; Mikael Knip; Heikki Hyöty; Riitta Veijola; Tuula Simell; Olli Simell; Josef Neu; Clive H Wasserfall; Desmond Schatz; Mark A Atkinson; Eric W Triplett
Journal:  ISME J       Date:  2010-07-08       Impact factor: 10.302

5.  On Bootstrap Tests of Symmetry About an Unknown Median.

Authors:  Tian Zheng; Joseph L Gastwirth
Journal:  J Data Sci       Date:  2010-07-01

6.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes.

Authors:  Kaisa M Kemppainen; Alexandria N Ardissone; Austin G Davis-Richardson; Jennie R Fagen; Kelsey A Gano; Luis G León-Novelo; Kendra Vehik; George Casella; Olli Simell; Anette G Ziegler; Marian J Rewers; Åke Lernmark; William Hagopian; Jin-Xiong She; Jeffrey P Krischer; Beena Akolkar; Desmond A Schatz; Mark A Atkinson; Eric W Triplett
Journal:  Diabetes Care       Date:  2014-12-17       Impact factor: 17.152

  7 in total
  2 in total

1.  Risk assessment analysis for maternal autoantibody-related autism (MAR-ASD): a subtype of autism.

Authors:  Alexandra Ramirez-Celis; Martin Becker; Miriam Nuño; Joseph Schauer; Nima Aghaeepour; Judy Van de Water
Journal:  Mol Psychiatry       Date:  2021-01-22       Impact factor: 13.437

2.  Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes.

Authors:  Kaisa M Kemppainen; Alexandria N Ardissone; Austin G Davis-Richardson; Jennie R Fagen; Kelsey A Gano; Luis G León-Novelo; Kendra Vehik; George Casella; Olli Simell; Anette G Ziegler; Marian J Rewers; Åke Lernmark; William Hagopian; Jin-Xiong She; Jeffrey P Krischer; Beena Akolkar; Desmond A Schatz; Mark A Atkinson; Eric W Triplett
Journal:  Diabetes Care       Date:  2014-12-17       Impact factor: 17.152

  2 in total

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