Literature DB >> 25218378

Chromogen detection of microRNA in frozen clinical tissue samples using LNA™ probe technology.

Boye Schnack Nielsen1, Trine Møller, Kim Holmstrøm.   

Abstract

Specific chromogen- and fluorescence-based detection of microRNA by in situ hybridization (ISH) in formalin-fixed and paraffin-embedded (FFPE) tissue sections has been facilitated by locked nucleic acid (LNA)-based probe technology and can be performed within a single working day. In the current method paper, we present a similar simple 1-day ISH method developed for cryostat sections obtained from clinical cryo-embedded tissue samples. The presented chromogen-based ISH method does not involve proteolytic pretreatment, which is mandatory for FFPE sections, but still retains a sensitivity level similar to that obtained in FFPE sections. The LNA-based ISH method is not only applicable in situations where only access to cryo-embedded material is possible, but it also has a potential use if combining microRNA ISH with immunohistochemistry in double fluorescence staining with antibodies not being compatible with proteolytic predigestion.

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Year:  2014        PMID: 25218378     DOI: 10.1007/978-1-4939-1459-3_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  MicroRNA-223 Ameliorates Nonalcoholic Steatohepatitis and Cancer by Targeting Multiple Inflammatory and Oncogenic Genes in Hepatocytes.

Authors:  Yong He; Seonghwan Hwang; Yan Cai; Seung-Jin Kim; Mingjiang Xu; Dingcheng Yang; Adrien Guillot; Dechun Feng; Wonhyo Seo; Xin Hou; Bin Gao
Journal:  Hepatology       Date:  2019-06-05       Impact factor: 17.425

2.  Detection of lncRNA by LNA-Based In Situ Hybridization in Paraffin-Embedded Cancer Cell Spheroids.

Authors:  Boye Schnack Nielsen; Jesper Larsen; Jakob Høffding; Son Ly Nhat; Natasha Helleberg Madsen; Trine Møller; Bjørn Holst; Kim Holmstrøm
Journal:  Methods Mol Biol       Date:  2021

3.  Automated Five-Color Multiplex Co-detection of MicroRNA and Protein Expression in Fixed Tissue Specimens.

Authors:  Lorenzo F Sempere; Erin Zaluzec; Elizabeth Kenyon; Matti Kiupel; Anna Moore
Journal:  Methods Mol Biol       Date:  2020

4.  MicroRNA-106b Regulates Expression of the Tumour Suppressors p21 and TXNIP and Promotes Tumour Cell Proliferation in Mycosis Fungoides.

Authors:  Lise M Lindahl; Maria Gluud; Thomas Emmanuel; Emil A Thomsen; Tengpeng Hu; Anne H Rittig; Pamela Celis; Veronica Stolearenco; Thorbjørn Krejsgaard; Claus Johansen; Andreas Willerslev-Olsen; Terkild B Buus; Anders Woetmann; Lars Aagaard; Carsten Geisler; Thomas Litman; Jacob G Mikkelsen; Niels Odum; Lars Iversen
Journal:  Acta Derm Venereol       Date:  2020-09-30       Impact factor: 3.875

5.  In vivo self-assembled siRNA as a modality for combination therapy of ulcerative colitis.

Authors:  Xinyan Zhou; Mengchao Yu; Luzhen Ma; Jinyu Fu; Jingwei Guo; Jieqiong Lei; Zheng Fu; Yong Fu; Qipeng Zhang; Chen-Yu Zhang; Xi Chen
Journal:  Nat Commun       Date:  2022-09-28       Impact factor: 17.694

6.  Pharmacokinetics and Pharmacodynamics of a 13-mer LNA-inhibitor-miR-221 in Mice and Non-human Primates.

Authors:  Maria Eugenia Gallo Cantafio; Boye Schnack Nielsen; Chiara Mignogna; Mariamena Arbitrio; Cirino Botta; Niels M Frandsen; Christian Rolfo; Pierosandro Tagliaferri; Pierfrancesco Tassone; Maria Teresa Di Martino
Journal:  Mol Ther Nucleic Acids       Date:  2016-06-21       Impact factor: 10.183

7.  Evaluation of fluorescence in situ hybridization techniques to study long non-coding RNA expression in cultured cells.

Authors:  Ricardo J Soares; Giulia Maglieri; Tony Gutschner; Sven Diederichs; Anders H Lund; Boye S Nielsen; Kim Holmstrøm
Journal:  Nucleic Acids Res       Date:  2018-01-09       Impact factor: 16.971

8.  In vitro inhibition of porcine reproductive and respiratory syndrome virus replication by short antisense oligonucleotides with locked nucleic acid modification.

Authors:  Lingyun Zhu; Junlong Bi; Longlong Zheng; Qian Zhao; Xianghua Shu; Gang Guo; Jia Liu; Guishu Yang; Jianping Liu; Gefen Yin
Journal:  BMC Vet Res       Date:  2018-03-26       Impact factor: 2.741

9.  Sensitive fluorescent hybridisation protocol development for simultaneous detection of microRNA and cellular marker proteins (in the retina).

Authors:  Andrea Kovács-Valasek; Bálint Szalontai; György Sétáló; Robert Gábriel
Journal:  Histochem Cell Biol       Date:  2018-08-07       Impact factor: 4.304

  9 in total

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