Literature DB >> 25217962

HLA-DQA1-HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants.

Graham A Heap1, Michael N Weedon2, Claire M Bewshea3, Abhey Singh4, Mian Chen5, Jack B Satchwell5, Julian P Vivian6, Kenji So4, Patrick C Dubois7, Jane M Andrews8, Vito Annese9, Peter Bampton10, Martin Barnardo5, Sally Bell11, Andy Cole12, Susan J Connor13, Tom Creed14, Fraser R Cummings15, Mauro D'Amato16, Tawfique K Daneshmend4, Richard N Fedorak17, Timothy H Florin18, Daniel R Gaya19, Emma Greig20, Jonas Halfvarson21, Alisa Hart22, Peter M Irving23, Gareth Jones24, Amir Karban25, Ian C Lawrance26, James C Lee27, Charlie Lees24, Raffi Lev-Tzion28, James O Lindsay29, John Mansfield30, Joel Mawdsley31, Zia Mazhar32, Miles Parkes27, Kirstie Parnell33, Timothy R Orchard34, Graham Radford-Smith35, Richard K Russell36, David Reffitt37, Jack Satsangi24, Mark S Silverberg38, Giacomo C Sturniolo39, Mark Tremelling40, Epameinondas V Tsianos41, David A van Heel42, Alissa Walsh43, Gill Watermeyer44, Rinse K Weersma45, Sebastian Zeissig46, Jamie Rossjohn6, Arthur L Holden47, Tariq Ahmad3.   

Abstract

Pancreatitis occurs in approximately 4% of patients treated with the thiopurines azathioprine or mercaptopurine. Its development is unpredictable and almost always leads to drug withdrawal. We identified patients with inflammatory bowel disease (IBD) who had developed pancreatitis within 3 months of starting these drugs from 168 sites around the world. After detailed case adjudication, we performed a genome-wide association study on 172 cases and 2,035 controls with IBD. We identified strong evidence of association within the class II HLA region, with the most significant association identified at rs2647087 (odds ratio 2.59, 95% confidence interval 2.07-3.26, P = 2 × 10(-16)). We replicated these findings in an independent set of 78 cases and 472 controls with IBD matched for drug exposure. Fine mapping of the HLA region identified association with the HLA-DQA1*02:01-HLA-DRB1*07:01 haplotype. Patients heterozygous at rs2647087 have a 9% risk of developing pancreatitis after administration of a thiopurine, whereas homozygotes have a 17% risk.

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Year:  2014        PMID: 25217962      PMCID: PMC6379053          DOI: 10.1038/ng.3093

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  35 in total

1.  Immune self-reactivity triggered by drug-modified HLA-peptide repertoire.

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Journal:  Nature       Date:  2012-06-28       Impact factor: 49.962

2.  AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.

Authors:  Oleg Trott; Arthur J Olson
Journal:  J Comput Chem       Date:  2010-01-30       Impact factor: 3.376

3.  Retraction.

Authors:  Paola Sebastiani; Nadia Solovieff; Annibale Puca; Stephen W Hartley; Efthymia Melista; Stacy Andersen; Daniel A Dworkis; Jemma B Wilk; Richard H Myers; Martin H Steinberg; Monty Montano; Clinton T Baldwin; Thomas T Perls
Journal:  Science       Date:  2011-07-22       Impact factor: 47.728

4.  MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.

Authors:  Yun Li; Cristen J Willer; Jun Ding; Paul Scheet; Gonçalo R Abecasis
Journal:  Genet Epidemiol       Date:  2010-12       Impact factor: 2.135

5.  Hemorrhagic pancreatitis. A fatal complication of renal transplantation.

Authors:  N L Tilney; J J Collins; R E Wilson
Journal:  N Engl J Med       Date:  1966-05-12       Impact factor: 91.245

6.  HLA-DQA1*02:01 is a major risk factor for lapatinib-induced hepatotoxicity in women with advanced breast cancer.

Authors:  Colin F Spraggs; Laura R Budde; Linda P Briley; Nan Bing; Charles J Cox; Karen S King; John C Whittaker; Vincent E Mooser; Alaknanda J Preston; Steven H Stein; Lon R Cardon
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7.  A map of human genome variation from population-scale sequencing.

Authors:  Gonçalo R Abecasis; David Altshuler; Adam Auton; Lisa D Brooks; Richard M Durbin; Richard A Gibbs; Matt E Hurles; Gil A McVean
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

Review 8.  Drug-induced acute pancreatitis: an evidence-based review.

Authors:  Nison Badalov; Robin Baradarian; Kadirawel Iswara; Jianjun Li; William Steinberg; Scott Tenner
Journal:  Clin Gastroenterol Hepatol       Date:  2007-03-28       Impact factor: 11.382

9.  Development and inter-rater reliability of the Liverpool adverse drug reaction causality assessment tool.

Authors:  Ruairi M Gallagher; Jamie J Kirkham; Jennifer R Mason; Kim A Bird; Paula R Williamson; Anthony J Nunn; Mark A Turner; Rosalind L Smyth; Munir Pirmohamed
Journal:  PLoS One       Date:  2011-12-14       Impact factor: 3.240

10.  Imputing amino acid polymorphisms in human leukocyte antigens.

Authors:  Xiaoming Jia; Buhm Han; Suna Onengut-Gumuscu; Wei-Min Chen; Patrick J Concannon; Stephen S Rich; Soumya Raychaudhuri; Paul I W de Bakker
Journal:  PLoS One       Date:  2013-06-06       Impact factor: 3.240

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  64 in total

Review 1.  Biomarkers of adverse drug reactions.

Authors:  Daniel F Carr; Munir Pirmohamed
Journal:  Exp Biol Med (Maywood)       Date:  2017-09-26

Review 2.  Genome-Wide Association Studies of Chemotherapeutic Toxicities: Genomics of Inequality.

Authors:  Brandon Mapes; Omar El Charif; Shereen Al-Sawwaf; M Eileen Dolan
Journal:  Clin Cancer Res       Date:  2017-04-25       Impact factor: 12.531

Review 3.  Pancreatitis in Children.

Authors:  Aliye Uc; Sohail Z Husain
Journal:  Gastroenterology       Date:  2019-02-01       Impact factor: 22.682

Review 4.  British Society of Gastroenterology consensus guidelines on the management of inflammatory bowel disease in adults.

Authors:  Christopher Andrew Lamb; Nicholas A Kennedy; Tim Raine; Philip Anthony Hendy; Philip J Smith; Jimmy K Limdi; Bu'Hussain Hayee; Miranda C E Lomer; Gareth C Parkes; Christian Selinger; Kevin J Barrett; R Justin Davies; Cathy Bennett; Stuart Gittens; Malcolm G Dunlop; Omar Faiz; Aileen Fraser; Vikki Garrick; Paul D Johnston; Miles Parkes; Jeremy Sanderson; Helen Terry; Daniel R Gaya; Tariq H Iqbal; Stuart A Taylor; Melissa Smith; Matthew Brookes; Richard Hansen; A Barney Hawthorne
Journal:  Gut       Date:  2019-09-27       Impact factor: 23.059

Review 5.  Genetic variation in IBD: progress, clues to pathogenesis and possible clinical utility.

Authors:  Byong Duk Ye; Dermot P B McGovern
Journal:  Expert Rev Clin Immunol       Date:  2016-06-15       Impact factor: 4.473

6.  How to approach understanding complex trait genetics - inflammatory bowel disease as a model complex trait.

Authors:  Isabelle Cleynen; Jonas Halfvarsson
Journal:  United European Gastroenterol J       Date:  2019-12-01       Impact factor: 4.623

7.  Characterisation of the HLA-DRB1*07:01 biomarker for lapatinib-induced liver toxicity during treatment of early-stage breast cancer patients with lapatinib in combination with trastuzumab and/or taxanes.

Authors:  C F Spraggs; L R Parham; L P Briley; L Warren; L S Williams; D J Fraser; Z Jiang; Z Aziz; S Ahmed; G Demetriou; A Mehta; N Jackson; J Byrne; M Andersson; M Toi; L Harris; J Gralow; J A Zujewski; R Crescenzo; A Armour; E Perez; M Piccart
Journal:  Pharmacogenomics J       Date:  2017-08-08       Impact factor: 3.550

Review 8.  Genetics of Inflammatory Bowel Diseases.

Authors:  Dermot P B McGovern; Subra Kugathasan; Judy H Cho
Journal:  Gastroenterology       Date:  2015-08-07       Impact factor: 22.682

Review 9.  New approaches for predicting T cell-mediated drug reactions: A role for inducible and potentially preventable autoimmunity.

Authors:  Aaron W Michels; David A Ostrov
Journal:  J Allergy Clin Immunol       Date:  2015-08       Impact factor: 10.793

Review 10.  Toxic-metabolic Risk Factors in Pediatric Pancreatitis: Recommendations for Diagnosis, Management, and Future Research.

Authors:  Sohail Z Husain; Veronique Morinville; John Pohl; Maisam Abu-El-Haija; Melena D Bellin; Steve Freedman; Peter Hegyi; Melvin B Heyman; Ryan Himes; Chee Y Ooi; Sarah J Schwarzenberg; Danielle Usatin; Aliye Uc
Journal:  J Pediatr Gastroenterol Nutr       Date:  2016-04       Impact factor: 2.839

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