Literature DB >> 25217590

The RIG-I ATPase core has evolved a functional requirement for allosteric stabilization by the Pincer domain.

David C Rawling1, Andrew S Kohlway1, Dahai Luo2, Steve C Ding1, Anna Marie Pyle3.   

Abstract

Retinoic acid-inducible gene I (RIG-I) is a pattern recognition receptor expressed in metazoan cells that is responsible for eliciting the production of type I interferons and pro-inflammatory cytokines upon detection of intracellular, non-self RNA. Structural studies of RIG-I have identified a novel Pincer domain composed of two alpha helices that physically tethers the C-terminal domain to the SF2 helicase core. We find that the Pincer plays an important role in mediating the enzymatic and signaling activities of RIG-I. We identify a series of mutations that additively decouple the Pincer motif from the ATPase core and show that this decoupling results in impaired signaling. Through enzymological and biophysical analysis, we further show that the Pincer domain controls coupled enzymatic activity of the protein through allosteric control of the ATPase core. Further, we show that select regions of the HEL1 domain have evolved to potentiate interactions with the Pincer domain, resulting in an adapted ATPase cleft that is now responsive to adjacent domains that selectively bind viral RNA.
© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2014        PMID: 25217590      PMCID: PMC4191399          DOI: 10.1093/nar/gku817

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  59 in total

1.  Differential roles of MDA5 and RIG-I helicases in the recognition of RNA viruses.

Authors:  Hiroki Kato; Osamu Takeuchi; Shintaro Sato; Mitsutoshi Yoneyama; Masahiro Yamamoto; Kosuke Matsui; Satoshi Uematsu; Andreas Jung; Taro Kawai; Ken J Ishii; Osamu Yamaguchi; Kinya Otsu; Tohru Tsujimura; Chang-Sung Koh; Caetano Reis e Sousa; Yoshiharu Matsuura; Takashi Fujita; Shizuo Akira
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

2.  Regulation of signal transduction by enzymatically inactive antiviral RNA helicase proteins MDA5, RIG-I, and LGP2.

Authors:  Darja Bamming; Curt M Horvath
Journal:  J Biol Chem       Date:  2009-02-11       Impact factor: 5.157

Review 3.  Translocation and unwinding mechanisms of RNA and DNA helicases.

Authors:  Anna Marie Pyle
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

4.  RIG-I-mediated antiviral responses to single-stranded RNA bearing 5'-phosphates.

Authors:  Andreas Pichlmair; Oliver Schulz; Choon Ping Tan; Tanja I Näslund; Peter Liljeström; Friedemann Weber; Caetano Reis e Sousa
Journal:  Science       Date:  2006-10-12       Impact factor: 47.728

5.  Analysis of the isolated SecA DEAD motor suggests a mechanism for chemical-mechanical coupling.

Authors:  Stanley Nithianantham; Brian H Shilton
Journal:  J Mol Biol       Date:  2008-08-22       Impact factor: 5.469

6.  Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor.

Authors:  C T Ranjith-Kumar; Ayaluru Murali; Wen Dong; Dharmaiah Srisathiyanarayanan; Robert Vaughan; Joanna Ortiz-Alacantara; Kanchan Bhardwaj; Xiaojun Li; Pingwei Li; Cheng C Kao
Journal:  J Biol Chem       Date:  2008-11-19       Impact factor: 5.157

7.  Cytosolic viral sensor RIG-I is a 5'-triphosphate-dependent translocase on double-stranded RNA.

Authors:  Sua Myong; Sheng Cui; Peter V Cornish; Axel Kirchhofer; Michaela U Gack; Jae U Jung; Karl-Peter Hopfner; Taekjip Ha
Journal:  Science       Date:  2009-01-01       Impact factor: 47.728

8.  The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I.

Authors:  Sheng Cui; Katharina Eisenächer; Axel Kirchhofer; Krzysztof Brzózka; Alfred Lammens; Katja Lammens; Takashi Fujita; Karl-Klaus Conzelmann; Anne Krug; Karl-Peter Hopfner
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

9.  Essential role of the N-terminal domain in the regulation of RIG-I ATPase activity.

Authors:  Peter Gee; Pong Kian Chua; Jirair Gevorkyan; Klaus Klumpp; Isabel Najera; David C Swinney; Jerome Deval
Journal:  J Biol Chem       Date:  2008-02-11       Impact factor: 5.157

10.  Length-dependent recognition of double-stranded ribonucleic acids by retinoic acid-inducible gene-I and melanoma differentiation-associated gene 5.

Authors:  Hiroki Kato; Osamu Takeuchi; Eriko Mikamo-Satoh; Reiko Hirai; Tomoji Kawai; Kazufumi Matsushita; Akane Hiiragi; Terence S Dermody; Takashi Fujita; Shizuo Akira
Journal:  J Exp Med       Date:  2008-07-07       Impact factor: 14.307

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  14 in total

1.  Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells.

Authors:  Ellen F Foxman; James A Storer; Megan E Fitzgerald; Bethany R Wasik; Lin Hou; Hongyu Zhao; Paul E Turner; Anna Marie Pyle; Akiko Iwasaki
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

2.  ATP Hydrolysis by the SNF2 Domain of Dnmt5 Is Coupled to Both Specific Recognition and Modification of Hemimethylated DNA.

Authors:  Phillip A Dumesic; Caitlin I Stoddard; Sandra Catania; Geeta J Narlikar; Hiten D Madhani
Journal:  Mol Cell       Date:  2020-05-20       Impact factor: 17.970

Review 3.  Sensing viral RNAs by Dicer/RIG-I like ATPases across species.

Authors:  Simona Paro; Jean-Luc Imler; Carine Meignin
Journal:  Curr Opin Immunol       Date:  2015-02-03       Impact factor: 7.486

4.  The autoinhibitory CARD2-Hel2i Interface of RIG-I governs RNA selection.

Authors:  Anand Ramanathan; Swapnil C Devarkar; Fuguo Jiang; Matthew T Miller; Abdul G Khan; Joseph Marcotrigiano; Smita S Patel
Journal:  Nucleic Acids Res       Date:  2015-11-26       Impact factor: 16.971

5.  Establishing the role of ATP for the function of the RIG-I innate immune sensor.

Authors:  David C Rawling; Megan E Fitzgerald; Anna Marie Pyle
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

Review 6.  When your cap matters: structural insights into self vs non-self recognition of 5' RNA by immunomodulatory host proteins.

Authors:  Daisy W Leung; Gaya K Amarasinghe
Journal:  Curr Opin Struct Biol       Date:  2016-02-23       Impact factor: 6.809

7.  A minimal RNA ligand for potent RIG-I activation in living mice.

Authors:  Melissa M Linehan; Thayne H Dickey; Emanuela S Molinari; Megan E Fitzgerald; Olga Potapova; Akiko Iwasaki; Anna M Pyle
Journal:  Sci Adv       Date:  2018-02-21       Impact factor: 14.136

8.  HDX-MS reveals dysregulated checkpoints that compromise discrimination against self RNA during RIG-I mediated autoimmunity.

Authors:  Jie Zheng; Chen Wang; Mi Ra Chang; Swapnil C Devarkar; Brandon Schweibenz; Gogce C Crynen; Ruben D Garcia-Ordonez; Bruce D Pascal; Scott J Novick; Smita S Patel; Joseph Marcotrigiano; Patrick R Griffin
Journal:  Nat Commun       Date:  2018-12-18       Impact factor: 14.919

9.  Kinetic discrimination of self/non-self RNA by the ATPase activity of RIG-I and MDA5.

Authors:  Jade Louber; Joanna Brunel; Emiko Uchikawa; Stephen Cusack; Denis Gerlier
Journal:  BMC Biol       Date:  2015-07-28       Impact factor: 7.431

10.  OASes and STING: adaptive evolution in concert.

Authors:  Alessandra Mozzi; Chiara Pontremoli; Diego Forni; Mario Clerici; Uberto Pozzoli; Nereo Bresolin; Rachele Cagliani; Manuela Sironi
Journal:  Genome Biol Evol       Date:  2015-03-09       Impact factor: 3.416

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