Literature DB >> 25214588

RNA Function. RNA and dynamic nuclear organization.

John Rinn1, Mitchell Guttman2.   

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Year:  2014        PMID： 25214588      PMCID： PMC4186717          DOI： 10.1126/science.1252966

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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  14 in total

Review 1.  Xist RNA and the mechanism of X chromosome inactivation.

Authors:  Kathrin Plath; Susanna Mlynarczyk-Evans; Dmitri A Nusinow; Barbara Panning
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

2.  A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced.

Authors:  Julie Chaumeil; Patricia Le Baccon; Anton Wutz; Edith Heard
Journal:  Genes Dev       Date:  2006-08-15       Impact factor: 11.361

3.  Chromatin architecture and nuclear RNA.

Authors:  J A Nickerson; G Krochmalnic; K M Wan; S Penman
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

Review 4.  The nucleolus: an organelle formed by the act of building a ribosome.

Authors:  T Mélèse; Z Xue
Journal:  Curr Opin Cell Biol       Date:  1995-06       Impact factor: 8.382

5.  The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome.

Authors:  Jesse M Engreitz; Amy Pandya-Jones; Patrick McDonel; Alexander Shishkin; Klara Sirokman; Christine Surka; Sabah Kadri; Jeffrey Xing; Alon Goren; Eric S Lander; Kathrin Plath; Mitchell Guttman
Journal:  Science       Date:  2013-07-04       Impact factor: 47.728

Review 6.  Long noncoding RNAs: an emerging link between gene regulation and nuclear organization.

Authors:  Sofia Quinodoz; Mitchell Guttman
Journal:  Trends Cell Biol       Date:  2014-10-23       Impact factor: 20.808

7.  A misplaced lncRNA causes brachydactyly in humans.

Authors:  Philipp G Maass; Andreas Rump; Herbert Schulz; Sigmar Stricker; Lisanne Schulze; Konrad Platzer; Atakan Aydin; Sigrid Tinschert; Mary B Goldring; Friedrich C Luft; Sylvia Bähring
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

8.  Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells.

Authors:  Stefan Schoenfelder; Tom Sexton; Lyubomira Chakalova; Nathan F Cope; Alice Horton; Simon Andrews; Sreenivasulu Kurukuti; Jennifer A Mitchell; David Umlauf; Daniela S Dimitrova; Christopher H Eskiw; Yanquan Luo; Chia-Lin Wei; Yijun Ruan; James J Bieker; Peter Fraser
Journal:  Nat Genet       Date:  2009-12-13       Impact factor: 38.330

9.  Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.

Authors:  Ezgi Hacisuleyman; Loyal A Goff; Cole Trapnell; Adam Williams; Jorge Henao-Mejia; Lei Sun; Patrick McClanahan; David G Hendrickson; Martin Sauvageau; David R Kelley; Michael Morse; Jesse Engreitz; Eric S Lander; Mitch Guttman; Harvey F Lodish; Richard Flavell; Arjun Raj; John L Rinn
Journal:  Nat Struct Mol Biol       Date:  2014-01-26       Impact factor: 15.369

10.  Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs.

Authors:  Yuntao S Mao; Hongjae Sunwoo; Bin Zhang; David L Spector
Journal:  Nat Cell Biol       Date:  2010-12-19       Impact factor: 28.824
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  50 in total

1.  Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2.

Authors:  Roland Elling; Elektra K Robinson; Barbara Shapleigh; Stephen C Liapis; Sergio Covarrubias; Sol Katzman; Abigail F Groff; Zhaozhao Jiang; Shiuli Agarwal; Mona Motwani; Jennie Chan; Shruti Sharma; Elizabeth J Hennessy; Garret A FitzGerald; Michael T McManus; John L Rinn; Katherine A Fitzgerald; Susan Carpenter
Journal:  Cell Rep       Date:  2018-11-06       Impact factor: 9.423

2.  Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.

Authors:  Sofia A Quinodoz; Noah Ollikainen; Barbara Tabak; Ali Palla; Jan Marten Schmidt; Elizabeth Detmar; Mason M Lai; Alexander A Shishkin; Prashant Bhat; Yodai Takei; Vickie Trinh; Erik Aznauryan; Pamela Russell; Christine Cheng; Marko Jovanovic; Amy Chow; Long Cai; Patrick McDonel; Manuel Garber; Mitchell Guttman
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

3.  Discovery and annotation of long noncoding RNAs.

Authors:  John S Mattick; John L Rinn
Journal:  Nat Struct Mol Biol       Date:  2015-01       Impact factor: 15.369

Review 4.  Illuminating Genomic Dark Matter with RNA Imaging.

Authors:  Arjun Raj; John L Rinn
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 5.  B chromosomes: from cytogenetics to systems biology.

Authors:  Guilherme T Valente; Rafael T Nakajima; Bruno E A Fantinatti; Diego F Marques; Rodrigo O Almeida; Rafael P Simões; Cesar Martins
Journal:  Chromosoma       Date:  2016-08-24       Impact factor: 4.316

6.  Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.

Authors:  Pornchai Kaewsapsak; David Michael Shechner; William Mallard; John L Rinn; Alice Y Ting
Journal:  Elife       Date:  2017-12-14       Impact factor: 8.140

7.  A CTG repeat-selective chemical screen identifies microtubule inhibitors as selective modulators of toxic CUG RNA levels.

Authors:  Kaalak Reddy; Jana R Jenquin; Ona L McConnell; John D Cleary; Jared I Richardson; Belinda S Pinto; Maja C Haerle; Elizabeth Delgado; Lori Planco; Masayuki Nakamori; Eric T Wang; J Andrew Berglund
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

8.  Reorganization of inter-chromosomal interactions in the 2q37-deletion syndrome.

Authors:  Philipp G Maass; Anja Weise; Katharina Rittscher; Julia Lichtenwald; A Rasim Barutcu; Thomas Liehr; Atakan Aydin; Yvette Wefeld-Neuenfeld; Laura Pölsler; Sigrid Tinschert; John L Rinn; Friedrich C Luft; Sylvia Bähring
Journal:  EMBO J       Date:  2018-06-19       Impact factor: 11.598

Review 9.  Unraveling the 3D genome: genomics tools for multiscale exploration.

Authors:  Viviana I Risca; William J Greenleaf
Journal:  Trends Genet       Date:  2015-04-14       Impact factor: 11.639

10.  ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure.

Authors:  Saumya Jain; Joshua R Wheeler; Robert W Walters; Anurag Agrawal; Anthony Barsic; Roy Parker
Journal:  Cell       Date:  2016-01-14       Impact factor: 41.582
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