Literature DB >> 2521386

Evidence for selenocysteine coordination to the active site nickel in the [NiFeSe]hydrogenases from Desulfovibrio baculatus.

M K Eidsness1, R A Scott, B C Prickril, D V DerVartanian, J Legall, I Moura, J J Moura, H D Peck.   

Abstract

Ni and Se x-ray absorption spectroscopic studies of the [NiFeSe]hydrogenases from Desulfovibrio baculatus are described. The Ni site geometry is pseudo-octahedral with a coordinating ligand composition of 3-4 (N,O) at 2.06 A, 1-2 (S,Cl) at 2.17 A, and 1 Se at 2.44 A. The Se coordination environment consists of 1 C at 2.0 A and a heavy scatterer M (M = Ni or Fe) at approximately 2.4 A. These results are interpreted in terms of a selenocysteine residue coordinated to the Ni site. The possible role of the Ni-Se site in the catalytic activation of H2 is discussed.

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Year:  1989        PMID: 2521386      PMCID: PMC286421          DOI: 10.1073/pnas.86.1.147

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  A SIMPLE SERUM IRON METHOD USING THE NEW SENSITIVE CHROMOGEN TRIPYRIDYL-S-TRIAZINE.

Authors:  D S FISCHER; D C PRICE
Journal:  Clin Chem       Date:  1964-01       Impact factor: 8.327

2.  Electron paramagnetic resonance studies on the mechanism of activation and the catalytic cycle of the nickel-containing hydrogenase from Desulfovibrio gigas.

Authors:  M Teixeira; I Moura; A V Xavier; B H Huynh; D V DerVartanian; H D Peck; J LeGall; J J Moura
Journal:  J Biol Chem       Date:  1985-07-25       Impact factor: 5.157

3.  Gene for a novel tRNA species that accepts L-serine and cotranslationally inserts selenocysteine.

Authors:  W Leinfelder; E Zehelein; M A Mandrand-Berthelot; A Böck
Journal:  Nature       Date:  1988-02-25       Impact factor: 49.962

4.  Identification of three classes of hydrogenase in the genus, Desulfovibrio.

Authors:  B C Prickril; S H He; C Li; N Menon; E S Choi; A E Przybyla; D V DerVartanian; H D Peck; G Fauque; J LeGall
Journal:  Biochem Biophys Res Commun       Date:  1987-12-16       Impact factor: 3.575

5.  A selenium-containing hydrogenase from Methanococcus vannielii. Identification of the selenium moiety as a selenocysteine residue.

Authors:  S Yamazaki
Journal:  J Biol Chem       Date:  1982-07-25       Impact factor: 5.157

Review 6.  Hydrogenase.

Authors:  M W Adams; L E Mortenson; J S Chen
Journal:  Biochim Biophys Acta       Date:  1980-12

7.  Separation of hydrogenase from intact cells of Desulfovibrio vulgaris. Purification and properties.

Authors:  H M van der Westen; S G Mayhew; C Veeger
Journal:  FEBS Lett       Date:  1978-02-01       Impact factor: 4.124

8.  Cloning and sequencing of the genes encoding the large and small subunits of the periplasmic (NiFeSe) hydrogenase of Desulfovibrio baculatus.

Authors:  N K Menon; H D Peck; J L Gall; A E Przybyla
Journal:  J Bacteriol       Date:  1987-12       Impact factor: 3.490

9.  Redox properties and activity studies on a nickel-containing hydrogenase isolated from a halophilic sulfate reducer Desulfovibrio salexigens.

Authors:  M Teixeira; I Moura; G Fauque; M Czechowski; Y Berlier; P A Lespinat; J Le Gall; A V Xavier; J J Moura
Journal:  Biochimie       Date:  1986-01       Impact factor: 4.079

10.  Desulfovibrio vulgaris hydrogenase: a nonheme iron enzyme lacking nickel that exhibits anomalous EPR and Mössbauer spectra.

Authors:  B H Huynh; M H Czechowski; H J Krüger; D V DerVartanian; H D Peck; J LeGall
Journal:  Proc Natl Acad Sci U S A       Date:  1984-06       Impact factor: 11.205

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  14 in total

1.  Analysis and comparison of nucleotide sequences encoding the genes for [NiFe] and [NiFeSe] hydrogenases from Desulfovibrio gigas and Desulfovibrio baculatus.

Authors:  G Voordouw; N K Menon; J LeGall; E S Choi; H D Peck; A E Przybyla
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

2.  Methanococcus voltae harbors four gene clusters potentially encoding two [NiFe] and two [NiFeSe] hydrogenases, each of the cofactor F420-reducing or F420-non-reducing types.

Authors:  S Halboth; A Klein
Journal:  Mol Gen Genet       Date:  1992-05

3.  FTIR spectroelectrochemical characterization of the Ni-Fe-Se hydrogenase from Desulfovibrio vulgaris Hildenborough.

Authors:  Antonio L De Lacey; Cristina Gutiérrez-Sánchez; Víctor M Fernández; Isabel Pacheco; Inês A C Pereira
Journal:  J Biol Inorg Chem       Date:  2008-08-13       Impact factor: 3.358

4.  Cloning and sequencing of a putative Escherichia coli [NiFe] hydrogenase-1 operon containing six open reading frames.

Authors:  N K Menon; J Robbins; H D Peck; C Y Chatelus; E S Choi; A E Przybyla
Journal:  J Bacteriol       Date:  1990-04       Impact factor: 3.490

5.  New Chemical and Stereochemical Applications of Organoiron Complexes.

Authors:  Alexander J Fatiadi
Journal:  J Res Natl Inst Stand Technol       Date:  1991 Jan-Feb

6.  Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase.

Authors:  Filipa M A Valente; A Sofia F Oliveira; Nicole Gnadt; Isabel Pacheco; Ana V Coelho; António V Xavier; Miguel Teixeira; Cláudio M Soares; Inês A C Pereira
Journal:  J Biol Inorg Chem       Date:  2005-11-02       Impact factor: 3.358

Review 7.  The hydrogenases and formate dehydrogenases of Escherichia coli.

Authors:  G Sawers
Journal:  Antonie Van Leeuwenhoek       Date:  1994       Impact factor: 2.271

8.  In Azotobacter vinelandii hydrogenase, substitution of serine for the cysteine residues at positions 62, 65, 294, and 297 in the small (HoxK) subunit affects H2 oxidation [corrected].

Authors:  L A Sayavedra-Soto; D J Arp
Journal:  J Bacteriol       Date:  1993-06       Impact factor: 3.490

9.  Further characterization of Cys-type and Ser-type anaerobic sulfatase maturating enzymes suggests a commonality in the mechanism of catalysis.

Authors:  Tyler L Grove; Jessica H Ahlum; Rosie M Qin; Nicholas D Lanz; Matthew I Radle; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2013-04-16       Impact factor: 3.162

10.  Substitution of Azotobacter vinelandii hydrogenase small-subunit cysteines by serines can create insensitivity to inhibition by O2 and preferentially damages H2 oxidation over H2 evolution.

Authors:  H McTavish; L A Sayavedra-Soto; D J Arp
Journal:  J Bacteriol       Date:  1995-07       Impact factor: 3.490

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