Literature DB >> 25213239

Manipulating the yeast genome: deletion, mutation, and tagging by PCR.

Jennifer M Gardner1, Sue L Jaspersen.   

Abstract

Saccharomyces cerevisiae is an ideal model eukaryotic system for the systematic analysis of gene function due to the ease and precision with which its genome can be manipulated. The ability of budding yeast to undergo efficient homologous recombination with short stretches of sequence homology has led to an explosion of PCR-based methods to delete and mutate yeast genes and to create fusions to epitope tags and fluorescent proteins. Here, we describe commonly used methods to generate gene deletions, to integrate mutated versions of a gene into the yeast genome, and to construct N- and C-terminal gene fusions. Using a high-efficiency yeast transformation protocol, DNA fragments with as little as 40 bp of homology can accurately target integration into a particular region of the yeast genome.

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Year:  2014        PMID: 25213239     DOI: 10.1007/978-1-4939-1363-3_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  31 in total

Review 1.  Not quite the SSAme: unique roles for the yeast cytosolic Hsp70s.

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Journal:  Curr Genet       Date:  2019-04-24       Impact factor: 3.886

Review 2.  Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae.

Authors:  Jacob S Antony; John M Hinz; John J Wyrick
Journal:  Front Bioeng Biotechnol       Date:  2022-05-30

3.  CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.

Authors:  Yu Zhao; Jay Rai; Hongguo Yu; Hong Li
Journal:  Structure       Date:  2022-04-29       Impact factor: 5.871

4.  Mutation of Conserved Mre11 Residues Alter Protein Dynamics to Separate Nuclease Functions.

Authors:  Samiur Rahman; Mahtab Beikzadeh; Marella D Canny; Navneet Kaur; Michael P Latham
Journal:  J Mol Biol       Date:  2020-04-01       Impact factor: 5.469

5.  Optogenetic Control Reveals Differential Promoter Interpretation of Transcription Factor Nuclear Translocation Dynamics.

Authors:  Susan Y Chen; Lindsey C Osimiri; Michael Chevalier; Lukasz J Bugaj; Taylor H Nguyen; R A Greenstein; Andrew H Ng; Jacob Stewart-Ornstein; Lauren T Neves; Hana El-Samad
Journal:  Cell Syst       Date:  2020-09-07       Impact factor: 10.304

6.  Super-resolution Microscopy-based Bimolecular Fluorescence Complementation to Study Protein Complex Assembly and Co-localization.

Authors:  Jingjing Chen; Zulin Yu; Jay R Unruh; Brian D Slaughter; Sue L Jaspersen
Journal:  Bio Protoc       Date:  2020-02-20

7.  Comprehensive Guide to Extracting and Expressing Fungal Secondary Metabolites with Aspergillus fumigatus as a Case Study.

Authors:  Grant Nickles; Isabelle Ludwikoski; Jin Woo Bok; Nancy P Keller
Journal:  Curr Protoc       Date:  2021-12

8.  Structured illumination with particle averaging reveals novel roles for yeast centrosome components during duplication.

Authors:  Shannon Burns; Jennifer S Avena; Jay R Unruh; Zulin Yu; Sarah E Smith; Brian D Slaughter; Mark Winey; Sue L Jaspersen
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

9.  Psp2, a novel regulator of autophagy that promotes autophagy-related protein translation.

Authors:  Zhangyuan Yin; Xu Liu; Aileen Ariosa; Haina Huang; Meiyan Jin; Katrin Karbstein; Daniel J Klionsky
Journal:  Cell Res       Date:  2019-10-30       Impact factor: 25.617

10.  Deacetylation of H4 lysine16 affects acetylation of lysine residues in histone H3 and H4 and promotes transcription of constitutive genes.

Authors:  Anagh Ray; Preeti Khan; Ronita Nag Chaudhuri
Journal:  Epigenetics       Date:  2020-08-23       Impact factor: 4.528

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