Literature DB >> 25200440

Nucleic acid ion structures in the gas phase.

Josephine Abi-Ghanem1, Valérie Gabelica.   

Abstract

Nucleic acids are diverse polymeric macromolecules that are essential for all life forms. These biomolecules possess a functional three-dimensional structure under aqueous physiological conditions. Mass spectrometry-based approaches have on the other hand opened the possibility to gain structural information on nucleic acids from gas-phase measurements. To correlate gas-phase structural probing results with solution structures, it is therefore important to grasp the extent to which nucleic acid structures are preserved, or altered, when transferred from the solution to a fully anhydrous environment. We will review here experimental and theoretical approaches available to characterize the structure of nucleic acids in the gas phase (with a focus on oligonucleotides and higher-order structures), and will summarize the structural features of nucleic acids that can be preserved in the gas phase on the experiment time scale.

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Year:  2014        PMID: 25200440     DOI: 10.1039/c4cp02362e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

1.  Assessing the Interplay between the Physicochemical Parameters of Ion-Pairing Reagents and the Analyte Sequence on the Electrospray Desorption Process for Oligonucleotides.

Authors:  Babak Basiri; Mandi M Murph; Michael G Bartlett
Journal:  J Am Soc Mass Spectrom       Date:  2017-04-12       Impact factor: 3.109

Review 2.  Combining Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) Spectroscopy for Integrative Structural Biology of Protein-RNA Complexes.

Authors:  Alexander Leitner; Georg Dorn; Frédéric H-T Allain
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

3.  A coarse-grained model for assisting the investigation of structure and dynamics of large nucleic acids by ion mobility spectrometry-mass spectrometry.

Authors:  S Vangaveti; R J D'Esposito; J L Lippens; D Fabris; S V Ranganathan
Journal:  Phys Chem Chem Phys       Date:  2017-06-14       Impact factor: 3.676

Review 4.  Mass Spectrometry-Based Techniques to Elucidate the Sugar Code.

Authors:  Márkó Grabarics; Maike Lettow; Carla Kirschbaum; Kim Greis; Christian Manz; Kevin Pagel
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

5.  Salt bridges govern the structural heterogeneity of heme protein interactions and porphyrin networks: microperoxidase-11.

Authors:  J Porter; K Jeanne Dit Fouque; J Miksovska; F Fernandez-Lima
Journal:  RSC Adv       Date:  2020-09-11       Impact factor: 4.036

6.  Ion Mobility-Mass Spectrometry Reveals Details of Formation and Structure for GAA·TCC DNA and RNA Triplexes.

Authors:  Jiawei Li; Alexander Begbie; Belinda J Boehm; Alexander Button; Charles Whidborne; Yannii Pouferis; David M Huang; Tara L Pukala
Journal:  J Am Soc Mass Spectrom       Date:  2018-10-19       Impact factor: 3.109

  6 in total

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