Literature DB >> 25197449

High-quality draft genome sequence of nematocidal Bacillus thuringiensis Sbt003.

Yingying Liu1, Weixing Ye1, Jinshui Zheng1, Lei Fang1, Donghai Peng1, Lifang Ruan1, Ming Sun1.   

Abstract

Bacillus thuringiensis represents one of the six species of "Bacillus cereus group" in the genus Bacillus within the family Bacillaceae. Strain Sbt003 was isolated from soil and identified as B. thuringiensis. It harbors at least seven plasmids and produces three shapes of parasporal crystals including oval, bipyramidal and rice. SDS-PAGE analysis of spore-crystal suspension of this strain reveals six major protein bands, which implies the presence of multiple parasporal crystal genes. Bioassay of this strain reveals that it shows specific activity against nematodes and human cancer cells. In this study, we report the whole genomic shotgun sequences of Sbt003. The high-quality draft of the genome is 6,175,670 bp long (including chromosome and plasmids) with 6,372 protein-coding and 80 RNA genes.

Entities:  

Keywords:  Bacillus thuringiensis; The Next-Generation sequencing; parasporal crystal protein

Year:  2014        PMID: 25197449      PMCID: PMC4148969          DOI: 10.4056/sigs.4738557

Source DB:  PubMed          Journal:  Stand Genomic Sci        ISSN: 1944-3277


  19 in total

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Authors:  E Helgason; O A Okstad; D A Caugant; H A Johansen; A Fouet; M Mock; I Hegna; A B Kolstø
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4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

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Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Fluorescent Amplified Fragment Length Polymorphism Analysis of Norwegian Bacillus cereus and Bacillus thuringiensis Soil Isolates.

Authors:  L O Ticknor; A B Kolstø; K K Hill; P Keim; M T Laker; M Tonks; P J Jackson
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

6.  Mining new crystal protein genes from Bacillus thuringiensis on the basis of mixed plasmid-enriched genome sequencing and a computational pipeline.

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Journal:  Appl Environ Microbiol       Date:  2012-04-27       Impact factor: 4.792

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Review 8.  Biology and taxonomy of Bacillus cereus, Bacillus anthracis, and Bacillus thuringiensis.

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10.  A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.

Authors:  Sean R Eddy
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2.  Dissimilar Crystal Proteins Cry5Ca1 and Cry5Da1 Synergistically Act against Meloidogyne incognita and Delay Cry5Ba-Based Nematode Resistance.

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  2 in total

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