Literature DB >> 25196995

Reconstruction of a generic metabolic network model of cancer cells.

Mahdieh Hadi1, Sayed-Amir Marashi.   

Abstract

A promising strategy for finding new cancer drugs is to use metabolic network models to investigate the essential reactions or genes in cancer cells. In this study, we present a generic constraint-based model of cancer metabolism, which is able to successfully predict the metabolic phenotypes of cancer cells. This model is reconstructed by collecting the available data on tumor suppressor genes. Notably, we show that the activation of oncogene related reactions can be explained by the inactivation of tumor suppressor genes. We show that in a simulated growth medium similar to the body fluids, our model outperforms the previously proposed model of cancer metabolism in predicting expressed genes.

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Year:  2014        PMID: 25196995     DOI: 10.1039/c4mb00300d

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  8 in total

1.  Reconstruction and validation of a constraint-based metabolic network model for bone marrow-derived mesenchymal stem cells.

Authors:  H Fouladiha; S-A Marashi; M A Shokrgozar
Journal:  Cell Prolif       Date:  2015-07-01       Impact factor: 6.831

2.  A kidney-specific genome-scale metabolic network model for analyzing focal segmental glomerulosclerosis.

Authors:  Salma Sohrabi-Jahromi; Sayed-Amir Marashi; Shiva Kalantari
Journal:  Mamm Genome       Date:  2016-02-29       Impact factor: 2.957

3.  Applications of a metabolic network model of mesenchymal stem cells for controlling cell proliferation and differentiation.

Authors:  Hamideh Fouladiha; Sayed-Amir Marashi; Mohammad Ali Shokrgozar; Mehdi Farokhi; Amir Atashi
Journal:  Cytotechnology       Date:  2017-10-04       Impact factor: 2.058

4.  A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism.

Authors:  Oveis Jamialahmadi; Sameereh Hashemi-Najafabadi; Ehsan Motamedian; Stefano Romeo; Fatemeh Bagheri
Journal:  PLoS Comput Biol       Date:  2019-04-22       Impact factor: 4.475

5.  The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency.

Authors:  Meisam Yousefi; Sayed-Amir Marashi; Ali Sharifi-Zarchi; Sara Taleahmad
Journal:  Cell Biosci       Date:  2019-08-29       Impact factor: 7.133

6.  Network-Based Metabolism-Centered Screening of Potential Drug Targets in Klebsiella pneumoniae at Genome Scale.

Authors:  Müberra Fatma Cesur; Bushra Siraj; Reaz Uddin; Saliha Durmuş; Tunahan Çakır
Journal:  Front Cell Infect Microbiol       Date:  2020-01-14       Impact factor: 5.293

7.  Reconstructed Metabolic Network Models Predict Flux-Level Metabolic Reprogramming in Glioblastoma.

Authors:  Emrah Özcan; Tunahan Çakır
Journal:  Front Neurosci       Date:  2016-04-18       Impact factor: 4.677

8.  Unraveling the molecular heterogeneity in type 2 diabetes: a potential subtype discovery followed by metabolic modeling.

Authors:  Maryam Khoshnejat; Kaveh Kavousi; Ali Mohammad Banaei-Moghaddam; Ali Akbar Moosavi-Movahedi
Journal:  BMC Med Genomics       Date:  2020-08-24       Impact factor: 3.063

  8 in total

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