Literature DB >> 25196944

Asymmetric contribution of aromatic interactions stems from spatial positioning of the interacting aryl pairs in β-hairpins.

Kamlesh Madhusudan Makwana1, Radhakrishnan Mahalakshmi.   

Abstract

Isolated aromatic interactions in designed octapeptide β-hairpin scaffolds display a near-universal T-shaped face-to-edge geometry in all positional permutations, with the exception of aryl-Trp interactions. The heterogeneous asymmetric indole ring of Trp competes for a "shielding" face geometry, which lowers the scaffold stability in FtE aryl-Trp pairs. Assessment of the contributions of aryl pairs (in the absence of solvent-driven interactions) to the overall β-hairpin structure reveals the superiority of Trp-Phe and Trp-Tyr contributions over the well-established scaffold stabilization by Trp-Trp.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; aromatic interaction; circular dichroism; peptides; tryptophan

Mesh:

Substances:

Year:  2014        PMID: 25196944     DOI: 10.1002/cbic.201402340

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  5 in total

Review 1.  Implications of aromatic-aromatic interactions: From protein structures to peptide models.

Authors:  Kamlesh Madhusudan Makwana; Radhakrishnan Mahalakshmi
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

2.  Aryl-aryl interactions in designed peptide folds: Spectroscopic characteristics and optimal placement for structure stabilization.

Authors:  Jordan M Anderson; Brandon L Kier; Brice Jurban; Aimee Byrne; Irene Shu; Lisa A Eidenschink; Alexander A Shcherbakov; Mike Hudson; R M Fesinmeyer; Niels H Andersen
Journal:  Biopolymers       Date:  2016-06       Impact factor: 2.505

3.  Position-Specific contribution of interface tryptophans on membrane protein energetics.

Authors:  Deepti Chaturvedi; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-11-09       Impact factor: 3.747

4.  A Two-Tailed Phosphopeptide Crystallizes to Form a Lamellar Structure.

Authors:  Michal Pellach; Sudipta Mondal; Karl Harlos; Deni Mance; Marc Baldus; Ehud Gazit; Linda J W Shimon
Journal:  Angew Chem Int Ed Engl       Date:  2017-02-13       Impact factor: 15.336

5.  Reversible folding energetics of Yersinia Ail barrel reveals a hyperfluorescent intermediate.

Authors:  Ankit Gupta; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-10-28       Impact factor: 3.747

  5 in total

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