Literature DB >> 25195898

Cloning, purification, crystallization and preliminary X-ray studies of a carbohydrate-binding module (CBM_E1) derived from sugarcane soil metagenome.

Bruna Medeia Campos1, Thabata Maria Alvarez2, Marcelo Vizona Liberato2, Igor Polikarpov3, Harry J Gilbert4, Ana Carolina de Mattos Zeri1, Fabio Marcio Squina2.   

Abstract

In recent years, owing to the growing global demand for energy, dependence on fossil fuels, limited natural resources and environmental pollution, biofuels have attracted great interest as a source of renewable energy. However, the production of biofuels from plant biomass is still considered to be an expensive technology. In this context, the study of carbohydrate-binding modules (CBMs), which are involved in guiding the catalytic domains of glycoside hydrolases for polysaccharide degradation, is attracting growing attention. Aiming at the identification of new CBMs, a sugarcane soil metagenomic library was analyzed and an uncharacterized CBM (CBM_E1) was identified. In this study, CBM_E1 was expressed, purified and crystallized. X-ray diffraction data were collected to 1.95 Å resolution. The crystals, which were obtained by the sitting-drop vapour-diffusion method, belonged to space group I23, with unit-cell parameters a = b = c = 88.07 Å.

Entities:  

Keywords:  GH5; accessory domain; biofuels; carbohydrate-binding module; glycoside hydrolases; renewable energy

Mesh:

Substances:

Year:  2014        PMID: 25195898      PMCID: PMC4157425          DOI: 10.1107/S2053230X14015520

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  20 in total

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Review 2.  Metagenomics and industrial applications.

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5.  Solvent content of protein crystals.

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Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Functional characterization and synergic action of fungal xylanase and arabinofuranosidase for production of xylooligosaccharides.

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Journal:  Bioresour Technol       Date:  2012-05-23       Impact factor: 9.642

7.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

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8.  X4 modules represent a new family of carbohydrate-binding modules that display novel properties.

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Review 9.  Scaling and assessment of data quality.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Structure and function of a novel cellulase 5 from sugarcane soil metagenome.

Authors:  Thabata M Alvarez; Joice H Paiva; Diego M Ruiz; João Paulo L F Cairo; Isabela O Pereira; Douglas A A Paixão; Rodrigo F de Almeida; Celisa C C Tonoli; Roberto Ruller; Camila R Santos; Fabio M Squina; Mario T Murakami
Journal:  PLoS One       Date:  2013-12-17       Impact factor: 3.240

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  1 in total

1.  A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.

Authors:  Bruna Medeia Campos; Marcelo Vizona Liberato; Thabata Maria Alvarez; Letícia Maria Zanphorlin; Gabriela Cristina Ematsu; Hernane Barud; Igor Polikarpov; Roberto Ruller; Harry J Gilbert; Ana Carolina de Mattos Zeri; Fabio Marcio Squina
Journal:  J Biol Chem       Date:  2016-09-12       Impact factor: 5.157

  1 in total

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