Literature DB >> 25193439

Data analysis for 16S microbial profiling from different benchtop sequencing platforms.

Victor S Pylro1, Luiz Fernando W Roesch2, Daniel K Morais3, Ian M Clark4, Penny R Hirsch4, Marcos R Tótola5.   

Abstract

Progress in microbial ecology is confounded by problems when evaluating results from different sequencing methodologies. Contrary to existing expectations, here we demonstrate that the same biological conclusion is reached using different NGS technologies when stringent sequence quality filtering and accurate clustering algorithms are applied.
Copyright © 2014 Elsevier B.V. All rights reserved.

Keywords:  Alpha diversity; Amplicons; Beta diversity; Microbial community analysis; Next generation sequencing

Mesh:

Substances:

Year:  2014        PMID: 25193439     DOI: 10.1016/j.mimet.2014.08.018

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  69 in total

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Journal:  Arch Microbiol       Date:  2020-11-22       Impact factor: 2.552

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10.  Taxonomic structure and functional association of foxtail millet root microbiome.

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Journal:  Gigascience       Date:  2017-10-01       Impact factor: 6.524

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