Literature DB >> 25187150

Phylotype diversity in a benthic cyanobacterial mat community on King George Island, maritime Antarctica.

Cecilia Callejas1, Paul R Gill, Ana I Catalán, Gastón Azziz, Susana Castro-Sowinski, Silvia Batista.   

Abstract

Cyanobacterial 16S ribosomal RNA gene diversity was examined in a benthic mat on Fildes Peninsula of King George Island (62º09'54.4''S, 58º57'20.9''W), maritime Antarctica. Environmental DNA was isolated from the mat, a clone library of PCR-amplified 16S rRNA gene fragments was prepared, and amplified ribosomal DNA restriction analysis (ARDRA) was done to assign clones to seven groups. Low cyanobacterial diversity in the mat was suggested in that 83% of the clones were represented by one ARDRA group. DNA sequences from this group had high similarity with 16S rRNA genes of Tychonema bourrellyi and T. bornetii isolates, whose geographic origins were southern Norway and Northern Ireland. Cyanobacterial morphotypes corresponding to Tychonema have not been reported in Antarctica, however, this morphotype was previously found at Ward Hunt Lake (83ºN), and in western Europe (52ºN). DNA sequences of three of the ARDRA groups had highest similarity with 16S rDNA sequences of the Tychonema group accounting for 9.4% of the clones. Sequences of the remaining three groups (7.6%) had highest similarity with 16S rRNA genes of uncultured cyanobacteria clones from benthic mats of Lake Fryxell and fresh meltwater on the McMurdo Ice Shelf.

Entities:  

Year:  2010        PMID: 25187150     DOI: 10.1007/s11274-010-0578-1

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  11 in total

1.  Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition.

Authors:  R I Griffiths; A S Whiteley; A G O'Donnell; M J Bailey
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

2.  Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a morphological and molecular approach.

Authors:  Arnaud Taton; Stana Grubisic; Evelyne Brambilla; Rutger De Wit; Annick Wilmotte
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

3.  Diversity within cyanobacterial mat communities in variable salinity meltwater ponds of McMurdo Ice Shelf, Antarctica.

Authors:  Anne-Dorothee Jungblut; Ian Hawes; Doug Mountfort; Bettina Hitzfeld; Daniel R Dietrich; Brendan P Burns; Brett A Neilan
Journal:  Environ Microbiol       Date:  2005-04       Impact factor: 5.491

4.  Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient.

Authors:  Etienne Yergeau; Stef Bokhorst; Ad H L Huiskes; Henricus T S Boschker; Rien Aerts; George A Kowalchuk
Journal:  FEMS Microbiol Ecol       Date:  2006-09-18       Impact factor: 4.194

5.  Relationships between the Arctic and the Antarctic cyanobacteria; three Phormidium-like strains evaluated by a polyphasic approach.

Authors:  Katia Comte; Marie Sabacká; Alyssa Carré-Mlouka; Josef Elster; Jirí Komárek
Journal:  FEMS Microbiol Ecol       Date:  2007-02       Impact factor: 4.194

6.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

7.  Occurrence and diversity of naphthalene dioxygenase genes in soil microbial communities from the Maritime Antarctic.

Authors:  Cecilia G Flocco; Newton C M Gomes; Walter Mac Cormack; Kornelia Smalla
Journal:  Environ Microbiol       Date:  2009-03       Impact factor: 5.491

8.  Evolution of cyanobacteria by exchange of genetic material among phyletically related strains.

Authors:  K Rudi; O M Skulberg; K S Jakobsen
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

9.  PCR primers to amplify 16S rRNA genes from cyanobacteria.

Authors:  U Nübel; F Garcia-Pichel; G Muyzer
Journal:  Appl Environ Microbiol       Date:  1997-08       Impact factor: 4.792

10.  Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria.

Authors:  Shoichiro Suda; Makoto M Watanabe; Shigeto Otsuka; Aparat Mahakahant; Wichien Yongmanitchai; Napavarn Nopartnaraporn; Yongding Liu; John G Day
Journal:  Int J Syst Evol Microbiol       Date:  2002-09       Impact factor: 2.747

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